Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral943g00118 ATGTCGCCGGTGGAGACCAGCAAGGGATGGAGTGGGGAGGAAGGCAAGCATTACCCTTCCCCACTCGCGACGCACGAGGATGTGGTCAAGGACCCCACCCTATTCTGGGACACTCTCAGGCGTTTCCACTTCCTCATGGGTACCAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACGAGGAGGAGTGGCTATGAAAAGGTGGTGGCAGAGAAGAAATGGAGAGAAGTGGGGAATGTGTTCAGGTTCTCTCCCACCACAACGAGTGCTTCTTTCGTACTCAGGAAACACTACTCGACTCTTCTTTACCATTACGAACAAGTCCACTTCTTTAAGGCTCGGGGTCCTCTGTACACTCCATCTGCTGCTGCATTTTCTGTCAGCAACCAGTCATGGAGACCTGAATTAGCTATTGTGGAATACTCACCCCAGCGGATAAACGAGTGTCCTGAATCCCACAGCGAAGATAATTCGGGCAGCGAAGTGAAGGGAATGATAGAGGGGAAATTCGACTGTGGGTATTTGGTGTCAGTGAAAGTGGGGACAGAGGTGCTGAGAGGGGTGCTTTACCACCCAGAGCAATCGGAAACCTGCGCATCGGCTTCGCAGAATAGGAATGCGATGGTGGCCTACAATGGAAAAGGCGGAGGCGTGGGCAGGAGGAGGAGGAACAGAAGGAGGTGGGACCCAAACTACCCGAAGCCCAACAGAAGCGGCTATAACTTCTTTTTTGCAGAGAAGCATTACAAGCTCAAAGCGCAGTATCCCAACAGAGAGAGGGAGTTCACCAAGATGATCGGCCAGTCGTGGAGCAGTCTGAGCGCGGAGGAGAGAATGGTATACCAGAACATTGGGTTGAGAGACAAGGAAAGGTACAAGAGAGAATTGAGGGAGTACAAGGAGAAAATGAAGGTCGCTCCCGCCGCGGAGCTTTCCGGTGTTTAA 975 0.5179 MSPVETSKGWSGEEGKHYPSPLATHEDVVKDPTLFWDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYSTLLYHYEQVHFFKARGPLYTPSAAAFSVSNQSWRPELAIVEYSPQRINECPESHSEDNSGSEVKGMIEGKFDCGYLVSVKVGTEVLRGVLYHPEQSETCASASQNRNAMVAYNGKGGGVGRRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKAQYPNREREFTKMIGQSWSSLSAEERMVYQNIGLRDKERYKRELREYKEKMKVAPAAELSGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral943g00118 324 MobiDBLite consensus disorder prediction 219 243 - -
Pral943g00118 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Pral943g00118 324 SMART bright_3 30 121 IPR001606 GO:0003677
Pral943g00118 324 SMART hmgende2 242 311 IPR009071 -
Pral943g00118 324 SMART ARID_2 26 116 - -
Pral943g00118 324 Pfam HMG (high mobility group) box 243 310 IPR009071 -
Pral943g00118 324 CDD HMG-box_AtHMGB9-like 243 309 - -
Pral943g00118 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 310 IPR009071 -
Pral943g00118 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Pral943g00118 324 SUPERFAMILY HMG-box 240 313 IPR036910 -
Pral943g00118 324 Gene3D High mobility group box domain 228 319 IPR036910 -
Pral943g00118 324 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Pral943g00118 324 Gene3D - 22 125 IPR036431 GO:0003677
Pral943g00118 324 MobiDBLite consensus disorder prediction 1 23 - -
Pral943g00118 324 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677
Pral943g00118 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral943g00118 Pral-Chr943 601912 604456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral943g00118 16 315 ARID Transcription Factor Family AT1G76110 65.147 1.40e-133 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pral943g00118 ARID 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral943g00118 - - gmx:100784746 474.552