LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral943g00063	ATGGCTTTCGTCGAAGACAAGGTTAAAACCGGAGGATTGATTGTTGGGGGTCAATCTCTAGCTGCTGAGATGAAGATGTTGAAAGAAATGCAGGATCAATCTGGGGGCCGAAAGAGTATAAATTCCGAGTTATGGCATGCTTGCGCTGGCCCACTTGTAGGCTTGCCTCAGGTGGGGAGTCTGGTTTATTATTTCCCTCAGGGACACAGTGAACAGGTGGCGGCTTCCACTAGAAGAACAGCAACCTCACAGATTCCAAACTATCCGAATCTTCAGTCTCAGTTGCTTTGCCAAGTTCAAAATGTTGCACTTCATGCAGATAAAGACACGGACGAAATATACGCTCAAATGAGTCTCCAACCATTGAATTCTGAAAAAGATGTATTTCCTATATCTGATTTTGGGATGAGGCCTAGTAAACATCCGAGTGAATTTTTCTGCAAAACTTTGACTGCTAGTGATACAAGCACGCACGGTGGCTTTTCTGTACCTCGCAGGGCCGCAGAAAAGCTCTTCCCTACATTGGACTATACCATTCAACCCCCAACCCAAGAGCTCGTTGTCCGAGACTTACATGATAACACTTGGACATTCCGACATATATACCGAGGTCAGCCGAAGAGACATCTTCTCACAACAGGTTGGAGTTTGTTTGTCGGCTCAAAGAGGCTTAAAGCTGGTGATGCTGTTCTTTTTATCAGGGACGAGAAATCACAATTGCTAGTTGGTGTTAGGCGCGCAAATCGTCAACAGACAACATTGCCGTCATCAGTCCTCTCTGCGGATAGCATGCATATTGGTGTGCTAGCCGCCGCAGCTCATGCTGCTGCTAATCAGAGCCCGTTTACTGTTTTCTACAACCCAAGGGCATGCACTTCAGAATTTGTTATTCCACTGGCTAAATACAGAAAAGCTGTATATGGTACCCAACTCTCAGTTGGCATGAGATTCGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGGTATATGGGCACTATAGTTGGTATCAGTGACTTGGATCCTTTGAGGTGGCCTGGTTCAAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAAAATAGAGTTAGTGCTTGGGAAATTGAGACTCCTGAGAGTCTTTTTATCTTCCCTTCTTTGACTTCGAGTCTGAAACGACCATTTCATTCTGGATCTTTTGGTGCAGAGAATGAGTGGGGAACTTTGTTAAGAAGGCCTTTTATACAAGTTCCTGAAAATGCAAATTTGGAGCTCCCAAACTCTTTACAAAATCTATACATGGAACATCTGATGAAAGTTCTTTTTAAACCTCAACTGGTGAACAATCCCGGAGCCTTTTCATCAGTCATGCAGCAAGAATCTGCTGCCAAGAGTGATGTCTCACAAGATTTGAAGAAGACAATAGCGACAGATAACCAAAAAGCACGTATCATGTGTTCAGGGAGCGTACTGCCAAAAAATCGAGATCATTCTCAATCTCTCCCTGACCAATCTAATGCCTTCAACTTGCATTCTCTGTTGAAAAGTGATGAAGCTGGCAAACAGCATCCGCTGCCAAAAATTGAGAATGCTCAATCGTCTGGAGCAGTTTCTGATAAGGCGCCGTTAGAGTCTGTGGACTTAACTGATCATATCATCGACTGCCCTTCAATAGAAGGTAAAGCAGCGGTGAACCCTATGAACCCACCAGGCCATGCGAGCCAAATGGCATTGCTTAATCAAAACCAGAGTCCGTGGCCCGGGCAGCCTCAGTTAGAATCAACAATATCTCATTCTCAAATGGTTGATATTCCTCAATCTGATTATGCTCTTTTAAATGGCCTGCTTCCTCAGGCGGATGTTGATGAATGGATGTTGTATTGCTCCTCGCAATCTTTTCCTGGATTGAGTAGATCAGCCGGGCCTTTGCAAGAACAGTCTCCGCTTCTCCCACAAGCAGTTAATACTCCTTTGCCCTCCGTGAGTCCAGAAATGTGGGATCATTATCTCAAAAATTTCAAGTCGTCACCTCAAGCAGACCAGTTAACAACCATCTCACAGCAAGGGTTGCAGAATTTTAACTGTGTATCTAATTCAAACAATCTGAGGGATCTATCAGCTGAGAGCAATAACCAAAGCGGGGTGTATAGTGGTGTCAATGTTGATGCTAGTTACAGTGTAAGTACTATGGTTGATCCTTCTACTTCGAGTACCATTTTGGATGATTTTTGCGTGTTGAAGGAGGATGGGGACTTCCAGAACCCATCAGATTGCATGGTTGGCAACTTAAGCTCGAGCCAGGACGTCCAGTCTCAGATAACCTCCGCGAGCCTAGCTGAGTCACATGTTTTCTCTCTGCAAGACATACCTGACAACTCAGGTGGTGGTGCATCTTCAAGCCGTGTTGATTTCGATGAAAGCAGCTTCTTGCAGAATAACTCATGGCCGCAAGTTGCTGCGCCCGTGCGAACCTACACCAAGGTTCAAAAGGCAGGGTCAGTTGGAAGATCATTAGATGTAACCACTTTTAAGAACTACGAGGAACTGATCTCCGCAATTGAACGGATGTTTGGACTTGAGGGTCTGTTGAACGACACCAAAGGTTCAGGATGGAAATTGGTATATGTAGATTATGAAAACGACGTTCTGCTTGTTGGGGATGATCCTTGGGAGGAATTCGTGGGATGTGTCCGCTGCATCAGGATTTTATCTCCCGTGGAAGTAAAACAGATGAGCGAGGAGGGAATGCAGCTTCTAAACAGTGCTGCGGTGCAGCAGTTCAATGGGCCCATGTCAGGCGGCTGCCCTTAG	2811	0.4546	MAFVEDKVKTGGLIVGGQSLAAEMKMLKEMQDQSGGRKSINSELWHACAGPLVGLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQNVALHADKDTDEIYAQMSLQPLNSEKDVFPISDFGMRPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPTLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANQSPFTVFYNPRACTSEFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSAWEIETPESLFIFPSLTSSLKRPFHSGSFGAENEWGTLLRRPFIQVPENANLELPNSLQNLYMEHLMKVLFKPQLVNNPGAFSSVMQQESAAKSDVSQDLKKTIATDNQKARIMCSGSVLPKNRDHSQSLPDQSNAFNLHSLLKSDEAGKQHPLPKIENAQSSGAVSDKAPLESVDLTDHIIDCPSIEGKAAVNPMNPPGHASQMALLNQNQSPWPGQPQLESTISHSQMVDIPQSDYALLNGLLPQADVDEWMLYCSSQSFPGLSRSAGPLQEQSPLLPQAVNTPLPSVSPEMWDHYLKNFKSSPQADQLTTISQQGLQNFNCVSNSNNLRDLSAESNNQSGVYSGVNVDASYSVSTMVDPSTSSTILDDFCVLKEDGDFQNPSDCMVGNLSSSQDVQSQITSASLAESHVFSLQDIPDNSGGGASSSRVDFDESSFLQNNSWPQVAAPVRTYTKVQKAGSVGRSLDVTTFKNYEELISAIERMFGLEGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPVEVKQMSEEGMQLLNSAAVQQFNGPMSGGCP	936

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral943g00063	936	CDD	B3_DNA	145	246	IPR003340	GO:0003677
	Pral943g00063	936	FunFam	Auxin response factor	144	248	-	-
	Pral943g00063	936	FunFam	Auxin response factor	310	382	-	-
	Pral943g00063	936	Pfam	B3 DNA binding domain	146	247	IPR003340	GO:0003677
	Pral943g00063	936	SUPERFAMILY	CAD & PB1 domains	822	902	-	-
	Pral943g00063	936	ProSiteProfiles	PB1 domain profile.	823	907	IPR000270	GO:0005515
	Pral943g00063	936	Gene3D	-	310	382	-	-
	Pral943g00063	936	SUPERFAMILY	DNA-binding pseudobarrel domain	135	275	IPR015300	-
	Pral943g00063	936	Pfam	AUX/IAA family	821	908	IPR033389	-
	Pral943g00063	936	FunFam	Auxin response factor	819	912	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral943g00063	Pral-Chr943	335395	342153	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral943g00063	19	932	B3 DNA Binding Superfamily	AT1G19850	59.893	0.0	988

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Pral943g00063		AUX_IAA	3.6e-10	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral943g00063	K14486		-	gmx:100813003	1408.28

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