Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral943g00062 ATGGCTTTCGTCGAAGACAAGGTTAAAACCGGAGGATTGATTGTTGGGGGTCAATCTCTAGCTGCTGAGATGAAGATGTTGAAAGAAATGCAGGATCAATCTGGGGGCCGAAAGAGTATAAATTCCGAGTTATGGCATGCTTGCGCTGGCCCACTTGTAGGCTTGCCTCAGGTGGGGAGTCTGGTTTATTATTTCCCTCAGGGACACAGTGAACAGGTGGCGGCTTCCACTAGAAGAACAGCAACCTCACAGATTCCAAACTATCCGAATCTTCAGTCTCAGTTGCTTTGCCAAGTTCAAAATGTTGCACTTCATGCAGATAAAGACACGGACGAAATATACGCTCAAATGAGTCTCCAACCATTGAATTCTGAAAAAGATGTATTTCCTATATCTGATTTTGGGATGAGGCCTAGTAAACATCCGAGTGAATTTTTCTGCAAAACTTTGACTGCTAGTGATACAAGCACGCACGGTGGCTTTTCTGTACCTCGCAGGGCCGCAGAAAAGCTCTTCCCTACATTGGACTATACCATTCAACCCCCAACCCAAGAGCTCGTTGTCCGAGACTTACATGATAACACTTGGACATTCCGACATATATACCGAGGTCAGCCGAAGAGACATCTTCTCACAACAGGTTGGAGTTTGTTTGTCGGCTCAAAGAGGCTTAAAGCTGGTGATGCTGTTCTTTTTATCAGGGACGAGAAATCACAATTGCTAGTTGGTGTTAGGCGCGCAAATCGTCAACAGACAACATTGCCGTCATCAGTCCTCTCTGCGGATAGCATGCATATTGGTGTGCTAGCCGCCGCAGCTCATGCTGCTGCTAATCAGAGCCCGTTTACTGTTTTCTACAACCCAAGGGCATGCACTTCAGAATTTGTTATTCCACTGGCTAAATACAGAAAAGCTGTATATGGTACCCAACTCTCAGTTGGCATGAGATTCGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGGTATATGGGCACTATAGTTGGTATCAGTGACTTGGATCCTTTGAGGTGGCCTGGTTCAAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAAAATAGAGTTAGTGCTTGGGAAATTGAGACTCCTGAGAGTCTTTTTATCTTCCCTTCTTTGACTTCGAGTCTGAAACGACCATTTCATTCTGGATCTTTTGGTGCAGAGAATGAGTGGGGAACTTTGTTAAGAAGGCCTTTTATACAAGTTCCTGAAAATGCAAATTTGGAGCTCCCAAACTCTTTACAAAATCTATACATGGAACATCTGATGAAAGTTCTTTTTAAACCTCAACTGGTGAACAATCCCGGAGCCTTTTCATCAGTCATGCAGCAAGAATCTGCTGCCAAGAGTGATGTCTCACAAGATTTGAAGAAGACAATAGCGACAGATAACCAAAAAGCACGTATCATGTGTTCAGGGAGCGTACTGCCAAAAAATCGAGATCATTCTCAATCTCTCCCTGACCAATCTAATGCCTTCAACTTGCATTCTCTGTTGAAAAGTGATGAAGCTGGCAAACAGCATCCGCTGCCAAAAATTGAGAATGCTCAATCGTCTGGAGCAGTTTCTGATAAGGCGCCGTTAGAGTCTGTGGACTTAACTGATCATATCATCGACTGCCCTTCAATAGAAGGTAAAGCAGCGGTGAACCCTATGAACCCACCAGGCCATGCGAGCCAAATGGCATTGCTTAATCAAAACCAGAGTCCGTGGCCCGGGCAGCCTCAGTTAGAATCAACAATATCTCATTCTCAAATGGTTGATATTCCTCAATCTGATTATGCTCTTTTAAATGGCCTGCTTCCTCAGGCGGATGTTGATGAATGGATGTTGTATTGCTCCTCGCAATCTTTTCCTGGATTGAGTAGATCAGCCGGGCCTTTGCAAGAACAGTCTCCGCTTCTCCCACAAGCAGTTAATACTCCTTTGCCCTCCGTGAGTCCAGAAATGTGGGATCATTATCTCAAAAATTTCAAGTCGTCACCTCAAGCAGACCAGTTAACAACCATCTCACAGCAAGGGTTGCAGAATTTTAACTGTGTATCTAATTCAAACAATCTGAGGGATCTATCAGCTGAGAGCAATAACCAAAGCGGGGTGTATAGTGGTGTCAATGTTGATGCTAGTTACAGTGTAAGTACTATGGTTGATCCTTCTACTTCGAGTACCATTTTGGATGATTTTTGCGTGTTGAAGGAGGATGGGGACTTCCAGAACCCATCAGATTGCATGGTTGGCAACTTAAGCTCGAGCCAGGACGTCCAGTCTCAGATAACCTCCGCGAGCCTAGCTGAGTCACATGTTTTCTCTCTGCAAGACATACCTGACAACTCAGGTGGTGGTGCATCTTCAAGCCGTGTTGATTTCGATGAAAGCAGCTTCTTGCAGAATAACTCATGGCCGCAAGTTGCTGCGCCCGTGCGAACCTACACCAAGGTTCAAAAGGCAGGGTCAGTTGGAAGATCATTAGATGTAACCACTTTTAAGAACTACGAGGAACTGATCTCCGCAATTGAACGGATGTTTGGACTTGAGGGTCTGTTGAACGACACCAAAGGTTCAGGATGGAAATTGGTATATGTAGATTATGAAAACGACGTTCTGCTTGTTGGGGATGATCCTTGGGAGGAATTCGTGGGATGTGTCCGCTGCATCAGGATTTTATCTCCCGTGGAAGTAAAACAGATGAGCGAGGAGGGAATGCAGCTTCTAAACAGTGCTGCGGTGCAGCAGTTCAATGGGCCCATGTCAGGCGGCTGCCCTTAG 2811 0.4546 MAFVEDKVKTGGLIVGGQSLAAEMKMLKEMQDQSGGRKSINSELWHACAGPLVGLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQNVALHADKDTDEIYAQMSLQPLNSEKDVFPISDFGMRPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPTLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANQSPFTVFYNPRACTSEFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSAWEIETPESLFIFPSLTSSLKRPFHSGSFGAENEWGTLLRRPFIQVPENANLELPNSLQNLYMEHLMKVLFKPQLVNNPGAFSSVMQQESAAKSDVSQDLKKTIATDNQKARIMCSGSVLPKNRDHSQSLPDQSNAFNLHSLLKSDEAGKQHPLPKIENAQSSGAVSDKAPLESVDLTDHIIDCPSIEGKAAVNPMNPPGHASQMALLNQNQSPWPGQPQLESTISHSQMVDIPQSDYALLNGLLPQADVDEWMLYCSSQSFPGLSRSAGPLQEQSPLLPQAVNTPLPSVSPEMWDHYLKNFKSSPQADQLTTISQQGLQNFNCVSNSNNLRDLSAESNNQSGVYSGVNVDASYSVSTMVDPSTSSTILDDFCVLKEDGDFQNPSDCMVGNLSSSQDVQSQITSASLAESHVFSLQDIPDNSGGGASSSRVDFDESSFLQNNSWPQVAAPVRTYTKVQKAGSVGRSLDVTTFKNYEELISAIERMFGLEGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPVEVKQMSEEGMQLLNSAAVQQFNGPMSGGCP 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral943g00062 936 CDD B3_DNA 145 246 IPR003340 GO:0003677
Pral943g00062 936 FunFam Auxin response factor 144 248 - -
Pral943g00062 936 FunFam Auxin response factor 310 382 - -
Pral943g00062 936 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Pral943g00062 936 SUPERFAMILY CAD & PB1 domains 822 902 - -
Pral943g00062 936 ProSiteProfiles PB1 domain profile. 823 907 IPR000270 GO:0005515
Pral943g00062 936 Gene3D - 310 382 - -
Pral943g00062 936 SUPERFAMILY DNA-binding pseudobarrel domain 135 275 IPR015300 -
Pral943g00062 936 Pfam AUX/IAA family 821 908 IPR033389 -
Pral943g00062 936 FunFam Auxin response factor 819 912 - -
Pral943g00062 936 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral943g00062 936 Gene3D - 819 912 - -
Pral943g00062 936 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Pral943g00062 936 SMART B3_2 146 248 IPR003340 GO:0003677
Pral943g00062 936 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 913 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral943g00062 936 Gene3D - 144 247 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral943g00062 Pral-Chr943 335395 342153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral943g00062 19 932 B3 DNA Binding Superfamily AT1G19850 59.893 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral943g00062 AUX_IAA 3.6e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral943g00062 K14486 - gmx:100813003 1408.28