Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral943g00023 ATGATGTACCCGAACCAAGCTTTTTCTTCTGGGTCCTACGCGGAGATGTTGTCTGGAAATTCCCTTTTACCTCATAACTTTACAGAAACTGTAGGAAGCCAAAATGAGGTGAAGTTCATCACAAGCGTAGGTGACACTGTGGCCATGCAATCTATTGATGGGCATTCCAACACTGCAGCAGGTGATCCATCTTTCTCAAGGACGCCACTGGGGCTCGTTGACAGCGAACAGAACATACAGAGCCAGGGCTTGTCTCTTAGCCTTGGCACGCTTATGCCTGTTCCTCCCTTCCAATACCACTATCCCTCCACCGGCTTTTCGTCATTTGTGACTCCAAGTCTTCCAAACTTTAAGGGCACTGTTTCTCTTAAAGATGACGAAGGTGCTGAATGCATGGCACCTGTGTCTTCTGGAGGTTTTAACAACTCCATCCAAAAGGAGGCTTTGTACCATCCGCACTTCTCACTCTACCACAAGGAAGTCCCCAATGATCCGTCGTGTCTGCATGGGACCCAAGGTTTTTCGAACGCTGCCTTAAACTCTCAATACCTTAAAGCAGCACAGGAATTGCTTGATGAAATTGTTAATGTACGAAAGGCTTTAAAGCAACCTGGACTGGAAAAGCACAAAGGTTCCCGTGACATTGGATTAGATGGCTCCAAAGAATCTGATGAAAAGTCTACCAGTCAGTCTATGCAGAAGCAGGACCCTAATGCTTCATCTGCCAATGCCTCATCTGAATTGTCACCCGCAGAACGGCAGAGTTTGTTGGATAAGAAGGCGAAGCTTTTGTCCATGTTAGACGAGGTAGATAAAAGATACCGGCAATACTGCCATCAGATGCAAATGGTGGTCTCATCTTTTGATATGGTTGCTGGTTGTGGGGCGGCTGAACCATACACTGCACTTGCTTTGCGAACAATTTCTCGCCATTTTCGTTGTTTGCGTGATGCTATTAGTGGCCAAATCCAAGTGACTCAGAGGAGCCTTGGAGAACAAGAGGGGATACCTCGTCTCCGCTATGTTGATCAGCAGCTGAGGCAACAAAAGGCCCTCCAGCAGCTTGGCGTGATGCGACAAGCTTGGAGGCCCCAGAGGGGACTTCCTGAAAGTTCTGTTTCGATACTTCGTGCTTGGCTCTTTGAGCATTTCCTTCATCCTTACCCAAAAGATTCGGAGAAAATTATGCTGGCAAGGCAAACTGGCCTGACCAGGAACCAGGTGGCAAACTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAGTTTGGTGATTCTGAGATGGCAAGCTGCAATCTCTCATCTGAAAGTACCCCACAAGGTCCAAGAGATAATAAAGGGGAAGAATCGCAGGGCAATGTTAAAGCTGCTAATAATGTCCCACAGGGGCAGCTTCATGAGTTGAAGCTAGACCAGAGCTCTGCTACAGAATTTGATACTGCCCATGGAGAAGCTGTCATGCATTCTAAAATTATGAAATTGCAGGGTGAGCAAAGGCTTAATATGAACAATAACTTTTATTCGGGCGGACCTATGCCAACCAACCACAACGGTGATAACTGCCTAATGCCTTCTGATACGGCCTCATACGATTTATCAGAGCTGGGTAGTTTCCAGGTGGGCGGCCATGTGTCTCTTGCGTTGGAGTTGCGCAACTGTGAAACCGAGGAATTCACCGCATCTGATAATGGTTTCAACAAACAACGTAACCAGACGTTAGGTTCTTCCCCAGAAAATAATCTGATCGATTATCATTTCACAGATTCAGGAAAGCAACAAAACAGGTTCAGTAATCCTCATCTAATGCATGAGTTTGTCGTCTGA 1851 0.4652 MMYPNQAFSSGSYAEMLSGNSLLPHNFTETVGSQNEVKFITSVGDTVAMQSIDGHSNTAAGDPSFSRTPLGLVDSEQNIQSQGLSLSLGTLMPVPPFQYHYPSTGFSSFVTPSLPNFKGTVSLKDDEGAECMAPVSSGGFNNSIQKEALYHPHFSLYHKEVPNDPSCLHGTQGFSNAALNSQYLKAAQELLDEIVNVRKALKQPGLEKHKGSRDIGLDGSKESDEKSTSQSMQKQDPNASSANASSELSPAERQSLLDKKAKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMASCNLSSESTPQGPRDNKGEESQGNVKAANNVPQGQLHELKLDQSSATEFDTAHGEAVMHSKIMKLQGEQRLNMNNNFYSGGPMPTNHNGDNCLMPSDTASYDLSELGSFQVGGHVSLALELRNCETEEFTASDNGFNKQRNQTLGSSPENNLIDYHFTDSGKQQNRFSNPHLMHEFVV 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral943g00023 616 CDD homeodomain 362 423 IPR001356 GO:0003677
Pral943g00023 616 SMART prehox3 172 321 IPR006563 -
Pral943g00023 616 MobiDBLite consensus disorder prediction 230 252 - -
Pral943g00023 616 SUPERFAMILY Homeodomain-like 363 430 IPR009057 -
Pral943g00023 616 MobiDBLite consensus disorder prediction 435 473 - -
Pral943g00023 616 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 449 - -
Pral943g00023 616 SMART HOX_1 362 426 IPR001356 GO:0003677
Pral943g00023 616 MobiDBLite consensus disorder prediction 205 229 - -
Pral943g00023 616 Pfam Associated with HOX 179 320 IPR006563 -
Pral943g00023 616 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
Pral943g00023 616 MobiDBLite consensus disorder prediction 437 473 - -
Pral943g00023 616 Gene3D - 359 436 - -
Pral943g00023 616 MobiDBLite consensus disorder prediction 205 252 - -
Pral943g00023 616 FunFam BEL1-like homeodomain protein 4 365 427 - -
Pral943g00023 616 ProSiteProfiles 'Homeobox' domain profile. 359 422 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral943g00023 Pral-Chr943 109635 114278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral943g00023 27 434 Homeobox Transcription Factor Family AT1G19700 48.736 2.65e-116 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral943g00023 POX 8.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral943g00023 - - gmx:100791641 796.193