Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral938g00004 ATGGAAAAGATGAATTTTGTTAGAAATGGAGTGAGCAGATTGCCTCCTGGTTTTCGGTTCCAGCCGACAGATCAAGAACTTGTGTTTCAGTACTTGAAATGCAAGATCTTCTGCCTTCCCTTGCCTGCTTCCATTATTCCTGACCTCAATCTCTGCAACTTCGATCCTTGGGATTTGCCAGGTAACTCTGATGAGGAAGAGAGGCACTTTTTCAGTCCAAAGGAAGCAAAATATCGAAATGGGAATCGCATGAACCGAACAACCACCTCTGGATATTGGAAGGCAACAGGATCAGACAAGAAAATAACTTCTTTAAGAAACAATGACATCGTTGGTATAAGAAAAACCCTTGTTTTTTACCAGGGTAATTCCCCAAACGGCTCTAAAACTGATTGGATCATGCACGAATATCGTCTTGTCTCTGCTTCTTCCAAGTCCGAGGAGGTCGGAGACTGGGTTCTGTGTCGAATATCCCTCAAGAAAACAAGTGGTGGTGACACGAGGAGGACGAGGAGTCACGTTCAGAATAATAATAATAATAACAACGACAGGCAAGACATGGTAGGTCAGCCAACATTCTTTGATTTTATGATGCTGCAAAACCAAAACCTCCATGCTTCAGCATCGTCGTCTTGTTCAAGCTCCAACGGTTATGTATCGGAACATGAAGAAACAAGTGGATATACTGGTTTCTAG 696 0.4282 MEKMNFVRNGVSRLPPGFRFQPTDQELVFQYLKCKIFCLPLPASIIPDLNLCNFDPWDLPGNSDEEERHFFSPKEAKYRNGNRMNRTTTSGYWKATGSDKKITSLRNNDIVGIRKTLVFYQGNSPNGSKTDWIMHEYRLVSASSKSEEVGDWVLCRISLKKTSGGDTRRTRSHVQNNNNNNNDRQDMVGQPTFFDFMMLQNQNLHASASSSCSSSNGYVSEHEETSGYTGF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral938g00004 231 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Pral938g00004 231 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Pral938g00004 231 MobiDBLite consensus disorder prediction 210 231 - -
Pral938g00004 231 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 202 - -
Pral938g00004 231 MobiDBLite consensus disorder prediction 169 187 - -
Pral938g00004 231 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pral938g00004 231 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Pral938g00004 231 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral938g00004 Pral-Chr938 42935 44968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral938g00004 1 231 NAC Transcription Factor Family AT5G13180 50.794 8.27e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral938g00004 NAM 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral938g00004 - - aprc:113868555 298.901