Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral937g00002 ATGATTTCTGGAGTAAGCGGCGTCGCTTGGATGGACGAAAACAGAGAAGGAGGCGACTCTACTGCTCCATCTTCATGGGCTAACGTGAACGCCAACATCAGCATCGACACGAACCAAAACCAGAGCCATTCTGGTTTTGTCCAGAACAAGGACGAGATGGGTTCTCTATGTGCTCTCAAACCCATGCTTGAAATCGATGACGATTGGTACATCGCGAACAATGGTATCCAAAATCAACCAGAAATTATCAGAGACATCACTTTCTCTCCCAACTTCGCTGACCAAGATAGTTTATTGCTGAACCCAGTAGATTCCTCATCTTCGTGTTCCCCATCTACTACCGTTTTCAACAATCTCGACCCATCTCAGGTTCCGTACTTTCTTCCTCCGAAACCCACCTTATCATCTCTTCTCAATGTCATCCCTAGTAACAACCCTTTAGACCATGGTTTTGATGCGGGTTGCGATGTCGGGTTTCTTGAGCCTCAAGCTTCCAGCTCTAGCCTTCTGCGAGGCTTCACCGATTTCGGCTCAAATAACAACCAGATAAGCCTTCCTAATTTATGCTCAGATCCACAAGTCCCAATGTCAGATATATCGCAGATAACCGAAATCGGTTTTTCGGGTTTTCGGGGTTTCGAGGAAGGTCATGGAAAACCGCTCTTCCTAAATAGACCCAAGATTTTGAGACCCCTTGAATCATTACCTCCTTCCGGAGCACAACCCACTCTGTTTCAGAAGAGAGTGGCTTTTCGAAAGAAGCTAGCGAATAACGATTCAGAGAGAGACGGAGGAAAGAGTGAAATTGGAGAGGGGAATGAGAAGAAGAGGAAGATGGGTAGTTGGGAAGAAATAGAAGACGCTAGCCTTGATGGGTCTGGGTTGAATTACGACTCCGATGAGTTGACTGAGAATACGAGGACGGATGAGAACGGCAAGAACGGAGGAAGCAGTTCGAATGTGAACAGTGCGGTGACTGGTGGTGATGGTGGCGATAAGAAGGGGAAGAAGAAGGGAATGCCTGCGAAGAATTTGATGGCTGAACGACGTCGTCGGAAGAAGCTCAATGACAGACTGTATATGTTGAGGTCCGTGGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCGATTGAGTACCTGAAAGAACTTATACAAAAGATCAGTGCCATCAATAACGAATTGGAGTCAACTCCTTCTGGCTCTTCGCTAAGTACTCCTGCCCCCAGCTTTCATCCTCTGACACCTACTCCGCCTGCATTACCCAGCCGTATAAAGGATGAACTTTGCCCTAGCTCATTGCCAAGCCCTAATGGCCAACCTGCAAGGATTGAGGTTCGGATGCGCGAAGGAAAAGCTGTAAATATTCACATGTTTTGTGGTCGCAAGCCTGGCCTCTTGCTTTCAACCATGAAGGCTTTGGACAGCATTGGGTTAGACATCCATCAAGCTGTTATTAGCTGTTTTAATGGATTTGCCATGGATATCTTTCGAGCTGAGCAATGGAAGGAAGCTGAAGACCTTCTTCATCCGGAGCAAATCAAAGCAGTACTGTTGGAGTCAGCTGGCTACCATGGCGGGATCTAG 1599 0.4709 MISGVSGVAWMDENREGGDSTAPSSWANVNANISIDTNQNQSHSGFVQNKDEMGSLCALKPMLEIDDDWYIANNGIQNQPEIIRDITFSPNFADQDSLLLNPVDSSSSCSPSTTVFNNLDPSQVPYFLPPKPTLSSLLNVIPSNNPLDHGFDAGCDVGFLEPQASSSSLLRGFTDFGSNNNQISLPNLCSDPQVPMSDISQITEIGFSGFRGFEEGHGKPLFLNRPKILRPLESLPPSGAQPTLFQKRVAFRKKLANNDSERDGGKSEIGEGNEKKRKMGSWEEIEDASLDGSGLNYDSDELTENTRTDENGKNGGSSSNVNSAVTGGDGGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELIQKISAINNELESTPSGSSLSTPAPSFHPLTPTPPALPSRIKDELCPSSLPSPNGQPARIEVRMREGKAVNIHMFCGRKPGLLLSTMKALDSIGLDIHQAVISCFNGFAMDIFRAEQWKEAEDLLHPEQIKAVLLESAGYHGGI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral937g00002 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Pral937g00002 532 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 224 528 - -
Pral937g00002 532 SMART finulus 345 394 IPR011598 GO:0046983
Pral937g00002 532 Gene3D - 333 403 IPR036638 GO:0046983
Pral937g00002 532 MobiDBLite consensus disorder prediction 309 326 - -
Pral937g00002 532 CDD ACT_UUR-ACR-like 460 525 - -
Pral937g00002 532 MobiDBLite consensus disorder prediction 400 414 - -
Pral937g00002 532 CDD bHLH_AtAMS_like 342 412 - -
Pral937g00002 532 MobiDBLite consensus disorder prediction 255 285 - -
Pral937g00002 532 MobiDBLite consensus disorder prediction 330 352 - -
Pral937g00002 532 MobiDBLite consensus disorder prediction 400 445 - -
Pral937g00002 532 MobiDBLite consensus disorder prediction 255 352 - -
Pral937g00002 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 409 IPR036638 GO:0046983
Pral937g00002 532 Pfam Helix-loop-helix DNA-binding domain 346 388 IPR011598 GO:0046983
Pral937g00002 532 FunFam BHLH transcription factor 335 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral937g00002 Pral-Chr937 25050 29900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral937g00002 59 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.351 2.74e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral937g00002 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral937g00002 - - cave:132174704 663.685