Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral937g00001 ATGGCATCACCAGAGGTATCGATAAAGGGAAATGGCGTGAACGGGATGGGGGAAGGCTTTTCTTCTGGTTATAGCAACCATGACGATGCTAGGAACGGTACAGAGGGTCAAAATGCTCATTCATTAACCGGGAAAGAAGCAGAAGCTGCACTTTACAGAGAGCTGTGGCATGCATGTGCTGGTCCTCTTGTTACAGTCCCCCGGGAAGGAGAGAGAGTCTTTTACTTTCCCCAAGGACATATCGAGCAGGTTGAGGCGTCCACTAATCAGGTGGCGGACCAGCATATGCCCTTGTACGATCTCCCTTCCCAAATCCCGTGTCGGGTGATCAACGTGCTGCTGAAGGCCGAGCCAGACACTGACGAGGTGTTCGCCCAGATCACCTTGGTTCCTGAGAACAGTGAAGGTGAAAAGACCGTGCAGGAGGAACTTTCACCGCCGCGATTTCACGTGCATTCTTTCTGTAAAACCCTGACTGCCTCTGATACCAGTACTCATGGCGGCTTTTCGGTACTGAGACGACATGCTGACGAATGCCTACCTCCTTTGGATATGTCTAAGCAGCCACCTACCCAGGAGTTAGTGGCAAAGGATCTGCATGGCAATGAGTGGCGATTCAGACATATCTTTCGTGGTCAACCACGTAGGCACTTACTGCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTCGTTGCAGGGGACGCCTTCATATTCCTTAGGGGCGAGAATGGGGAGCTTCGTGTTGGTGTCAGGCGGGCAATGAGGCAGCAGGGTAATGTTCCATCCTCAGTGATCTCCTGTCATAGCATGCATCTCGGTGTCCTTGCGACTGCTTGGCATGCTATCTCAACTGGCACCATGTTCACTGTTTATTACAAGCCTAGGACAAGTCCAGCTGAGTTTATTGTTCCATACGATCAATATATGGAGTCTCTAAAAAATAACTACACAATAGGGATGCGATTCAAAATGAGGTTTGAAGGTGAGGAGGCTCCAGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGATCCCAACAGGTGGCCGAATTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAATATACCTCGCCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTGTTGCTCCTCCAGCTTTGAATCCTCTTCCAATGCCCAGGCCTAAGAGGCCTCGTACTAATGTGGTTCCACTATCCCCCGACTCCTCTGTTCTTACTCGAGAAGCCTCATCTAAAGTAAGTAAAGACCCTTCACTGGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATACCCGACCTTGGGAGGCAGTTTTGCAGAAAGCAACGAGTCTGTTACTGCAGATGATGAAAAGATTGATATGGTTTCCACCTCAAGAAGATACGAGTCAGAGAGCTGGATGTCAATGGGGAGGCATGAGCCAACGTACTCAGATCTATTGTCACAATTTGGAGCCAGTGGAGATTCTTTTCGACCACCCGTGGCTGGTCAGACTGGGCCTCTGGCTAGTCCTGCTAAAAAGCATTTGAGGGAACAGGATGGGAGGTTTAAGGCAATGACCAATCCATGGCCTCTAGGGCCCTCTGGTCTATCACTAAACCTCCTTGACTCAAATATCAAGGGTTCTGTGAATGGTGGTGATGTAACATATCATACCCCAGGGAATGTGAGGTATGGTGCGTTTAGTGACTACCCTGTTCTCCATAGTCATAAAATCCAGCAGTTACATGGGAATTCGTTGATGCCGCCACCAACTTCAACACCATATGAGAGTTCTCGTCCAAGAGAGTTGATGTCAAAACCAGTCTCAACACGTACAAGTGAGTCTGTCAAGCCAAAAGATGGGGATTATAAGCTCTTTGGCTTCTCACTTATCAGTGGCCCTGTTACACAAGAGCCATCTGTATCCCAAAGAAATGTGACTCGCGAGTCACCAGGTCACATGCATCCTGCATCTTCCAAACTTCATGAAAGTGATGATAAATCAGATCAATCGAGGGGCTCAAAACCAGCTGATGTGGCTGCTGACGAAGACCCAGAGAAGTCATTGCAAGCTTCTCGTGCACATCTGAAAGAAGTTCAAGCCAAACTGCCTAGTGGTTCTGCTAGGAGTTGCACTAAAGTACACAAGAAGGGAATTGCACTTGGTAGGTCAGTGGACCTCACAAAGTTCAACAACTATGAAGAATTAGTTGTTGAGCTAGACCAGCTGTTTGAATTTGCTGGTGAATTGATGTCTCCTAAAAAGGATTGGCTTATTGTCTATACTGATGATGAGGATGACATGATGCTTGTTGGGGATGATCCATGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTATATCTATCCCAAGGAGGAGATTCAAAAAATGAACCCAGGTACACTAAGTTTAAGGAATGAAGAGAATCAGTTGGCTAGCGAAGGTGCAGAGGCCAAAATTGGAAGTCAGTTGCATCATTTAGCTTTGGTGCCTGATAATTCGTAG 2523 0.4756 MASPEVSIKGNGVNGMGEGFSSGYSNHDDARNGTEGQNAHSLTGKEAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPLYDLPSQIPCRVINVLLKAEPDTDEVFAQITLVPENSEGEKTVQEELSPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAISTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPNRWPNSKWRCLKVRWDETSNIPRPERVSPWKIEPAVAPPALNPLPMPRPKRPRTNVVPLSPDSSVLTREASSKVSKDPSLASGFPRVLQGQEYPTLGGSFAESNESVTADDEKIDMVSTSRRYESESWMSMGRHEPTYSDLLSQFGASGDSFRPPVAGQTGPLASPAKKHLREQDGRFKAMTNPWPLGPSGLSLNLLDSNIKGSVNGGDVTYHTPGNVRYGAFSDYPVLHSHKIQQLHGNSLMPPPTSTPYESSRPRELMSKPVSTRTSESVKPKDGDYKLFGFSLISGPVTQEPSVSQRNVTRESPGHMHPASSKLHESDDKSDQSRGSKPADVAADEDPEKSLQASRAHLKEVQAKLPSGSARSCTKVHKKGIALGRSVDLTKFNNYEELVVELDQLFEFAGELMSPKKDWLIVYTDDEDDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMNPGTLSLRNEENQLASEGAEAKIGSQLHHLALVPDNS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral937g00001 840 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Pral937g00001 840 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Pral937g00001 840 MobiDBLite consensus disorder prediction 407 428 - -
Pral937g00001 840 Pfam Auxin response factor 280 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral937g00001 840 SUPERFAMILY CAD & PB1 domains 718 792 - -
Pral937g00001 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 804 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral937g00001 840 MobiDBLite consensus disorder prediction 661 696 - -
Pral937g00001 840 Gene3D - 151 256 IPR015300 -
Pral937g00001 840 MobiDBLite consensus disorder prediction 640 655 - -
Pral937g00001 840 MobiDBLite consensus disorder prediction 588 625 - -
Pral937g00001 840 CDD B3_DNA 152 254 IPR003340 GO:0003677
Pral937g00001 840 SMART B3_2 154 256 IPR003340 GO:0003677
Pral937g00001 840 Gene3D - 317 388 - -
Pral937g00001 840 Pfam AUX/IAA family 708 799 IPR033389 -
Pral937g00001 840 Gene3D - 711 804 - -
Pral937g00001 840 SUPERFAMILY DNA-binding pseudobarrel domain 149 283 IPR015300 -
Pral937g00001 840 MobiDBLite consensus disorder prediction 1 42 - -
Pral937g00001 840 MobiDBLite consensus disorder prediction 387 433 - -
Pral937g00001 840 ProSiteProfiles PB1 domain profile. 715 797 IPR000270 GO:0005515
Pral937g00001 840 MobiDBLite consensus disorder prediction 640 696 - -
Pral937g00001 840 FunFam Auxin response factor 317 389 - -
Pral937g00001 840 FunFam Auxin response factor 152 256 - -
Pral937g00001 840 FunFam Auxin response factor 711 804 - -
Pral937g00001 840 MobiDBLite consensus disorder prediction 588 618 - -
Pral937g00001 840 MobiDBLite consensus disorder prediction 18 41 - -
Pral937g00001 840 MobiDBLite consensus disorder prediction 387 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral937g00001 Pral-Chr937 17903 23644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral937g00001 1 825 B3 DNA Binding Superfamily AT5G62000 63.573 0.0 1057
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral937g00001 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral937g00001 - - gmx:100815956 1233.39