Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral936g00007 ATGCCAGTAACTGGGGAGTTGTCACAACAAAGTATCAAAGATCGTTATTATGGGGTGAACGATCCTATGGCATTAAAGTTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGCCTCCAGAGGATGAGACCATTGGAACTCTTTATGTTGGTGTGCTTGATGCTAGGGTCAGTGAGCAGGATCTTCGTGATCACTTTTATGCCCATGGTGACATAGAATCCATCAAGATGGTGCTCCAACGGGCTTGTGCATTTGTAACCTACACAACCAGGGAGGGTGCAGAAAAAGTAGCAGAAGAGCTCTCCAACAAGCTAGTTATCAAGGGCCTAAGGTTAAAGCTGATGTGTGGCAGACCACAGACAGCAAAACCAGACTCTAAAAGTTCTGATCAAGCAAGGCAACAGGCATTTGTGGCTCACAGTGGGTTGTTGCCTCGAGCTATCATATCGCAACAGCAGAGCCATGATCAAACCCAGAGAGTGCATTACTATAACATTGCACCTCCTCCTCGGCAAGATAGAAGCTACTATCCATCAATGGATCCTCAGAGAATGGGTGTTGTTATTCCATCTTAA 576 0.4618 MPVTGELSQQSIKDRYYGVNDPMALKLLGKAGEMTSLEPPEDETIGTLYVGVLDARVSEQDLRDHFYAHGDIESIKMVLQRACAFVTYTTREGAEKVAEELSNKLVIKGLRLKLMCGRPQTAKPDSKSSDQARQQAFVAHSGLLPRAIISQQQSHDQTQRVHYYNIAPPPRQDRSYYPSMDPQRMGVVIPS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral936g00007 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 106 IPR000504 GO:0003723
Pral936g00007 191 Gene3D - 30 130 IPR012677 -
Pral936g00007 191 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 186 IPR039171 GO:0003723
Pral936g00007 191 FunFam Zinc finger CCCH domain-containing protein 40 31 127 - -
Pral936g00007 191 CDD RRM_RBM22 45 118 - -
Pral936g00007 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 119 IPR000504 GO:0003723
Pral936g00007 191 SMART rrm1_1 47 115 IPR000504 GO:0003723
Pral936g00007 191 SUPERFAMILY RNA-binding domain, RBD 39 127 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral936g00007 Pral-Chr936 208404 213229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral936g00007 36 107 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 7.25e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral936g00007 K12872 - gmx:100789382 321.242