Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral927g00006 ATGGATCACAAGCTCCACAAAGGAGATAACATCTCACCAATTCTTTTGGAAACAATAGAGGAATCAGAGATATCTTTGATTATTTTCTCTAAAGATTATGCCTCTTCAACATGGTGTATGGATGAACTCGTTCATATTATGAAATGTCGGGATAAATACAAAAGGGATGTCATACCTATTTTCTACCACGTTGATCCATCAAATATTCGCAAACAAGAAGGGAGTTTTGGAGATGGATTTGCTAAGCTTAAGCAAAGATTTAAGCACAACGAAGAAAAAGTGCAGGAGTGGAAAAAAGCTTTGAACCAATCAACAAATCTCTCTGGATGGGATTCAAAGAATTTCAGGACTGAACCCAAACTCATCAAAAAGATTGTGAAAGATATTCTGAGCAAATTGAATAGCAAGCCGTCCTTTCATCTAGAAGGATTAGTTGGGATTAGTCATCAAATCCAGAAAATTGAAGAGCTACTCGATGAAGCTCGCATTGTGGGAATATGGGGTATGGGAGGTATGGGTAAGACTACTCTTGCTAGAGCTGTATTCCACAAGTTGAAAGCACAGTTTAACGCTCTCTCCTTTGTTGAAAATGTAAGAAAACAACAAGGAATAATTGGGTTTGACAGATTACAACAAGAATGTCTCAAAGAATTAATAAAAGATGAGGACATTAATGTCTTTGACATAAAATCCACTTTTGTAAGAAATAGGCTTCGACGCAAAAAAATTCTTCTGATACTTGATGATGTGGACAATTCAATACCAGCTGAGGATTTAACTAAAGTGTATCATTGGTTTGGAGAAGGAAGTAGAATTATTCTCACATCAAGAGACATGCAAGTACTTCAAAATGCTTTTGCATTTTCAATATACTCTGTCCCAAGATTGGATTTCCATGACGCCCTTCATCTTTTTAGTTTGAAAGCATTCAAGCAAAATGAGCCATTTAAAAGTTATGTGGAGCTATCAAAATCAGTAGTGGATTATTGTCAAGGAAATCCTTTTGCCCTTGTAAAGTTGGGTTCTTTTCTTCAGGGCAGAGGAAAAGAAGAATGGGAAAGTTCTTTGGAAAAAATAGAAGAAACTCCACCCAATTACATTATTGATGTTCTGAAATTGAGTTTTGATGGACTTGATAGGGACCAGAAGAATATGTTTCTTGACATAGCATTTTTCATCAAGGAAAAAGTTGATGTTTCTTTGGACCTAATAGGACAATTATATGGCTCTTCTGTAGATATTGACGTAAATGTTCTTAAAGACAGATCCCTCACTTCATTTGATCACAATGGCTATATTGAAATGCATAATCTTGTGAGGGACATGGGCGTTGAAATTGCTAGACAACAGTCATTTTCTAATCCTAAAGGCTCTGTTCGACTGCGAAGTCATAGGGACATCTATGATTTTTTCATTTGTAACAAGGTGACTGAGTCTATTCGATGCTTGTCATTGGACATGAGCAAGATAAAAAGGATTCCATTGACAATTAATGACCTTCGAAAGATGCATAATTTAATATTTCTAAAATTTTATTGGTCTGATGGGAGAGGGCCTTCAAAGTTGCTTATGGGTAAAGACATGAGTTATCTTCCAGGTGAACTAATTCAAGGTTGTTAG 1620 0.3593 MDHKLHKGDNISPILLETIEESEISLIIFSKDYASSTWCMDELVHIMKCRDKYKRDVIPIFYHVDPSNIRKQEGSFGDGFAKLKQRFKHNEEKVQEWKKALNQSTNLSGWDSKNFRTEPKLIKKIVKDILSKLNSKPSFHLEGLVGISHQIQKIEELLDEARIVGIWGMGGMGKTTLARAVFHKLKAQFNALSFVENVRKQQGIIGFDRLQQECLKELIKDEDINVFDIKSTFVRNRLRRKKILLILDDVDNSIPAEDLTKVYHWFGEGSRIILTSRDMQVLQNAFAFSIYSVPRLDFHDALHLFSLKAFKQNEPFKSYVELSKSVVDYCQGNPFALVKLGSFLQGRGKEEWESSLEKIEETPPNYIIDVLKLSFDGLDRDQKNMFLDIAFFIKEKVDVSLDLIGQLYGSSVDIDVNVLKDRSLTSFDHNGYIEMHNLVRDMGVEIARQQSFSNPKGSVRLRSHRDIYDFFICNKVTESIRCLSLDMSKIKRIPLTINDLRKMHNLIFLKFYWSDGRGPSKLLMGKDMSYLPGELIQGC 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral927g00006 539 Gene3D - 1 139 IPR035897 -
Pral927g00006 539 PRINTS Disease resistance protein signature 237 251 - -
Pral927g00006 539 PRINTS Disease resistance protein signature 330 344 - -
Pral927g00006 539 PRINTS Disease resistance protein signature 163 178 - -
Pral927g00006 539 Pfam TIR domain 2 138 IPR000157 GO:0007165
Pral927g00006 539 SMART till_3 1 107 IPR000157 GO:0007165
Pral927g00006 539 Coils Coil 80 100 - -
Pral927g00006 539 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 110 IPR035897 -
Pral927g00006 539 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 135 - -
Pral927g00006 539 Gene3D - 296 379 IPR042197 -
Pral927g00006 539 Pfam NB-ARC domain 152 362 IPR002182 GO:0043531
Pral927g00006 539 ProSiteProfiles TIR domain profile. 1 133 IPR000157 GO:0007165
Pral927g00006 539 SUPERFAMILY "Winged helix" DNA-binding domain 367 467 IPR036390 -
Pral927g00006 539 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 535 IPR044974 GO:0006952
Pral927g00006 539 Gene3D - 140 287 IPR027417 -
Pral927g00006 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 389 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral927g00006 Pral-Chr927 62077 65433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral927g00006 35 535 WRKY Transcription Factor Family AT4G12020 30.452 2.61e-58 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral927g00006 - - pcin:129286024 681.019