LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral916g00002	ATGGCAAGCAGCTCCCAAGTTATAACTTGCAAAGGAGCAATATGCTGGGGAATAGGAGAGGCAGTGAAGGTAGAAGAGATACAAGTAGATCCTCCAAAAGCCTCCGAAGTTCGTGTTAAGATGCTCTTTGCTAGTATCTGCCACACAGACTTCTTGAGAGCTCGAGGCCACCCATATGTGAGATCCTATTTACCCTCTTTTCCTCTTGCACTAGGCCATGAAGGTGTAGGTGTTGTGGAGAGCGTGGGGGAAGAAGTGAAAGATTTCAAAGAAGGAGATGTGGTGATTCCAATATACATTGGGGAATGTGGAGAATGTGAGAATTGTGTTTCAGAGGAATCAAACTTATGCCTGAGATATCCTTTAAGAGTGAGTGGGCTAATGCCTGATGACACATCAAGGATTTCTGTTAGAGGGGAAAAGGCTTACCATGTGTTTAGCTGCTCAACATGGTGTGAGTACATGGTTAGTGATGAAAAATATCTTATGAAAGTTGATCCAAGTATTGATTTGGCTCATGCTAGCTTCATCTCTTGTGGATTCTCCACTGGTTTTGGAGCTTCTTGGAAGACAGGCCAAGTTCAAAGTGGGTCATCTGTGGCTGTTTTCGGCCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAGATGATGGGAGCGACAAAGATAATTGGGATCGACATAAATGAGAAGAAAAGAGAAAAAGGAGAAGCTTTTGGAATGACAGATTTCATAAATCCTAAGGATCATTCTGATAAGCCTTCTTCTCAACTGGTGAAGGACCTCACTGGTGGATTGGGTGTGGATTATGCCATTGAGTGCACTGGTGTTGCCTCTTTGCTCACTCAAGCCCTAGAATCTACTAAAGTGGGGAGAGGAAAGGCAATAGCAATTGGGGTGGGAAGTGAAGAATTTGTTCAAGTCAACTGGTTAGGTCTTCTTCTTGGGAGGACTTTGAAGGGTTCAATTTTTGGAGGCTTGAAACCCCAATCTGACCTTTCCATTTTAGCCGCCAAATGCAAGAACAAGGATTTCCCAATTGAGAAGCTTTTGACCCATGAAGTCCCGTTGACAGAGATAAACAAAGCTTTTGAGCTCTTGAAGCAGCCGGATTGTGTCAAAGTTATTATCAAGATGTGA	1143	0.4366	MASSSQVITCKGAICWGIGEAVKVEEIQVDPPKASEVRVKMLFASICHTDFLRARGHPYVRSYLPSFPLALGHEGVGVVESVGEEVKDFKEGDVVIPIYIGECGECENCVSEESNLCLRYPLRVSGLMPDDTSRISVRGEKAYHVFSCSTWCEYMVSDEKYLMKVDPSIDLAHASFISCGFSTGFGASWKTGQVQSGSSVAVFGLGAVGLGAISGAKMMGATKIIGIDINEKKREKGEAFGMTDFINPKDHSDKPSSQLVKDLTGGLGVDYAIECTGVASLLTQALESTKVGRGKAIAIGVGSEEFVQVNWLGLLLGRTLKGSIFGGLKPQSDLSILAAKCKNKDFPIEKLLTHEVPLTEINKAFELLKQPDCVKVIIKM	380

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral916g00002	380	SMART	PKS_ER_names_mod	17	378	IPR020843	GO:0016491
	Pral916g00002	380	PANTHER	ALCOHOL DEHYDROGENASE	6	372	-	-
	Pral916g00002	380	Gene3D	-	184	323	-	-
	Pral916g00002	380	SUPERFAMILY	GroES-like	332	378	IPR011032	-
	Pral916g00002	380	Pfam	Zinc-binding dehydrogenase	207	327	IPR013149	-
	Pral916g00002	380	Gene3D	-	13	375	-	-
	Pral916g00002	380	FunFam	S-(hydroxymethyl)glutathione dehydrogenase	184	323	-	-
	Pral916g00002	380	FunFam	alcohol dehydrogenase 1-like isoform X1	18	183	-	-
	Pral916g00002	380	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	72	86	IPR002328	GO:0008270\|GO:0016491
	Pral916g00002	380	Pfam	Alcohol dehydrogenase GroES-like domain	35	165	IPR013154	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral916g00002	Pral-Chr916	4954	7455	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral916g00002	35	372	Monolignol Biosynthesis Gene Families	AT2G21730	26.608	1.63e-18	84.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral916g00002	K00121		-	gmx:100798341	515.768

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