Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral905g00002 ATGTGTTTCTTAAAGGCGGGGAATCCTGTGCAGACCTCCCACAACGTTGTTGATGAACACACAAACGTTAGAATAACAAACCCTACTGTTTCTTCGTCTCTTCCAATCGTCTTCCCCGGTATGGATAGGGACAGAGAGATGTCTGCTATGGTCTCTGCTTTGACCCACGTTGTCACGGGAGATATTCCTGGTGATTCCAGAGAAATTTCTGGCGGTGGCGGTGGCGGTGGCGGTGGAGGTGGAGGCGAAGGTGGCTCTGTTACATTAAACTCGCCGTCGGATTCAACAACGCCGTCTTCGTGTTCTTCGTCTTACGGTGGTAGCTCTGTTTTGAAGAGAAGTAGAGAAGATATCATTAGAGGCTCTTCCCCTTCTATTATTCAAACAGTTGCAGGAGAAGGTTCAAGAGGAGAGAGAGTTCAAATGGGAAATGCAGTGTATGAATATAGCTGTAATACAGAGAATGTGAGAGGTTCAGAAGAAGGAAGAAGGAAGTACCGAGGAGTGAGACAGAGGCCATGGGGCAAGTGGGCAGCTGAAATCAGAGATCCTTTTAAAGCCGCCAGAGTTTGGCTGGGCACTTTCGAGACGGCGGAGGCGGCGGCCCGTGCTTACGACGAAGCTGCCCTGCGTTTCAGAGGAAACAAGGCCAAGCTCAATTTCCCAGAAAACGTCAGGCTCCGGCAACCTACGACCACGACGGCGGCGACCCATTTGAGTGGTTCGGGTTCTGCAAGTACCCTTTTGTCCATTCCGTTGTCCACCGAGCCGATTGTTCATGCCGAAGCTCTTCACCACCATTCTCTCCTGAGTTCTCAGCCGGCGTTTTCTGGTGATTTTTATACGCCGTCGCAGTTTTCGGAGTTTCCCATGAACTTTTATGATCCGATGATTATGTCATCTTCAATGCCTCATCATTTTGAGTCGTCGACGTTGCCGTCAGCTTTGTCATCGTCGTCATCGGCTTCGTCTTCTACGTTGGCATCTTCTATTAGCTCCCAGCAAGGAGGTTTGCCGTTTCCGGGTTGGGTCATGCCGGAAACGGGTCCGGAAAGCGCTTCCGAACAGGGACCATCAGCATGGTCAACTTCGGGTCATAGTGCTTCTTCCTCTGTATGA 1119 0.5067 MCFLKAGNPVQTSHNVVDEHTNVRITNPTVSSSLPIVFPGMDRDREMSAMVSALTHVVTGDIPGDSREISGGGGGGGGGGGGEGGSVTLNSPSDSTTPSSCSSSYGGSSVLKRSREDIIRGSSPSIIQTVAGEGSRGERVQMGNAVYEYSCNTENVRGSEEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVRLRQPTTTTAATHLSGSGSASTLLSIPLSTEPIVHAEALHHHSLLSSQPAFSGDFYTPSQFSEFPMNFYDPMIMSSSMPHHFESSTLPSALSSSSSASSSTLASSISSQQGGLPFPGWVMPETGPESASEQGPSAWSTSGHSASSSV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral905g00002 372 CDD AP2 165 224 IPR001471 GO:0003700|GO:0006355
Pral905g00002 372 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700|GO:0006355
Pral905g00002 372 MobiDBLite consensus disorder prediction 86 108 - -
Pral905g00002 372 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Pral905g00002 372 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
Pral905g00002 372 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
Pral905g00002 372 MobiDBLite consensus disorder prediction 59 108 - -
Pral905g00002 372 MobiDBLite consensus disorder prediction 309 372 - -
Pral905g00002 372 Gene3D AP2/ERF domain 164 224 IPR036955 GO:0003700|GO:0006355
Pral905g00002 372 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
Pral905g00002 372 MobiDBLite consensus disorder prediction 352 372 - -
Pral905g00002 372 MobiDBLite consensus disorder prediction 309 337 - -
Pral905g00002 372 Pfam AP2 domain 165 214 IPR001471 GO:0003700|GO:0006355
Pral905g00002 372 FunFam Ethylene-responsive transcription factor 2 164 223 - -
Pral905g00002 372 PANTHER DNA-BINDING DOMAIN 141 323 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral905g00002 Pral-Chr905 25977 28026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral905g00002 163 238 AP2-EREBP Transcription Factor Family AT5G13330 78.947 6.01e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral905g00002 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral905g00002 - - pcin:129309833 431.409