LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral902g00001	ATGCAAGTACTTGTAGAGTGCGGCCTTGTAAAGGTTATCAATGACAAGATTCATGTGCATGATTTGCTACAAGAGATAGGGAGGGAAATCACTACAGACAATAAGCCAAAATTCACATGTCTCTATGATGTATTCTTAAGTTTTAGAGGTGGGGATACGCATAAATCATTTACCACTCATCTTTATAATGCTATGAAACAAGTAGGAATTGAGGTTTTCATGGATGAAGAAAGGATTGATAGGGGGGAACACATTTCAACTTCGTTACTGGGGGCAATTGAAAATTCTAGAATTTCAATCATTATATTCTCAACAAATTATGCCGGCTCTAGTTGGTGCTTGCAAGAATTAGAGAAAATCATGGAGTGTTACAAAACTCATCAAGAGGTTTTCCCTATATTCTATGATGTGCACCCATCTGATGTCCGTAAACAACAAAATGCCTTTGGAAAAGCATGGGAAAGACTTACAACAAGACCCTCAGGTAGCAAGGGTAAGAAATTCACAAACAATTTGAAGAGGGTCCTTGCTGAGGCTGCCAACCTATCAGGGTGGGACATGCAAAACTATAGAACTGAGACTGAGTTACTTGACGATGTTGTGAAAACTATCACAATGAGGCTAGACAATAGCAAATACATGTTTGTTGCTCACCATCCAGTGGGTTTGGAGTCTCGAGTGCAAGATATCATCCAACTGCTAAGTAGTGAATCAAATGACATCATCATAATAGGCATTTTGGGGATGGGAGGAATTGGCAAGACCACGGTGGCTAAAACTATTTACAATGAAATGGGCCAAAGTTTTGTGGGAAAGAGTTTCCTTGCAAATATTAGGGAAGTATGGAAACAAGATAATGGTCAAGTTTATTTGCAAGAACAACTTATTTCTAGTATCTTCAAAACAAGACGGATCAAGCTACCAAATGCGGGGAGGGGGAAATCTCTAATCAAGGAAATTCTTTGTCAAAAAAGAGTATTTCTTGTATTAGATGATGTCAATAATGAAGAACAACTCAAAGTTTTATGTGGGAGTCGTGAATGGTTTGGCCAAGGAAGCAGAATAATTATTACGACAAGAGACCAACGTTTACTTCAAATCCTTCAAGTGGATAAAGTATTTAGTGCAAGGGAAATGGATGATAATGAATCTATTGAGCTTTTCAGTTGGTATGCGTTTAAGCAAGCACTTCCCGAAAGAAATTTCATTGAACTTTCGAGAAGAGTAGTATCATACTGTGGAGGGCTGCCACTAGCTCTTGAAATCCTTGGCTCATATTTGTTTGACAGGGAAAGACCTTATTGGGAAAGTGCTTTGAGTAAATTGAAACAAATTCCTAATGGTAAAATATATGAAATTCTAAAGATAAGCCATGATGGTTTGAGTGATAAAATGGAGCAAGAGCTATTCCTAGACATATGTTGTTTTTTCATTGGAAAGGATAGAAGTTATGCAACTCAAGTACTAGATGGCTGTGGACTCTATGCAGAAATTGGAATTACCCATCTAATTGAGCGAAGCCTTGTAAAAGTTGTAAAATTTGAAAACAAAAACGTACTTGATATGCACGACTTGCTACGTGATATGGGAAGAGAAATCATTCGTGAACAATCACCAGAGGAGCCAGAGAAGCGTACAAGATTATGGTTTAATGATGATGTGTTGAATGTGCTAGGAAACAACATAGGAACAACAGCTATCAAGGGATTGTCTTTAAACATGCCAAGAAACAATTCAATACCCTTGAGTACCAAGGCATTTAAGAAGATGAAGAGGCTTCGTTTACTCAACTTTGATAATGTACAACTTGATGGAGACTATGGTCATCTATCAAAAGAACTTAGATGGCTTTGTTGGCGTAGATTTCTTTTAAAAAGTTGGCCAGCAGACTTCAATCTGGAAAAGATAGTTGCCATTGACTTAAAGTGGAGTAACCTAACAAAAGCATGGGAGAAAAGCCAGGTGCTGGAGGGGTTGAAAATTCTCAATTTGAGTCATTCTCACTGCCTAACAGAAACATCTGACTTCTCAAACTTACCATATCTTGAGAAGTTGATACTTAAAGATTGTCGAGGTTTGTCTATGATTCACCCTTCTATTGGAAATCTTAGACATCTTATTATGCTAAATTTGAAAAACTGCAATGGCTTGGAGCATCTTCCGAGAAGTATATATGACTTGAAATCTTTGAGAACTCTCAATCTTTTTGGTTGTTCCAAAATTGAAAGGTTGGATGAAGACATTGAGAAAATGGAATCTTTAACGGTTTTGGTGGCAACTCGAACTGCTATAACACAAGCACCCATCTCATTAGTGAGATTGAAGAACATTAAATATGTTTCTTTATGTGGTTATGAAGGATTGTCACATGACATATTTCCATCTCTTATGTTATCTTGGATGCCCCCAACAAATCATTCAAGGTCCTTATTTCAAGCATTTGGGATCATGCCATCGCTAATCAAGATTTTTTCACATCCTTTGTTTGCTAAAAGTCGTGAAATATTCAAAGCAAAACCAAGACCATCTCAAGTTTCATGTAAAAAGACTCCAGCATTGATTGGTTTTGGCGAGCAAGTTCACAAGGAAAGATCAGAAACATTCATGAGTTCTACAACAATTCATGTGGGCGAGTTCAACCAAGTTATTGACACACTTTTAAGGAGTATTTCACAGAGATGCAGTGAAAGAGGTTTTGGAGTTAATTCTTTTCCTGGAGACAATTATCCTCATTGGCGGAATTTCAAAGGTGAAGGATCTTCAATATGCTTTGAAGTTCCTAAAATTATTGGCAAAAGTTTGAAAGGATTGATTCTGTGCATAATCTATTTGTCTTCTCAAGACAACATGACATCTGTATATTATCCTGTTGGTATCCTGGTATCAAATCATACAAAGGCTACCATTAAATTGTACCAGAAAAATGCAACAACTGCTTCAAATGATGAAGATAATTGGCGAGACATCATCTCTAACTTGGAGACTGGTAACAGAGTGGAGGTTATAGTCACTTTTGCTTGTGAATTGAAAGTAAAACACACAGTTGTCTATTTGGTATATGATGAAGATGCTGTTAAGAGAATCATGTACTGA	3093	0.3708	MQVLVECGLVKVINDKIHVHDLLQEIGREITTDNKPKFTCLYDVFLSFRGGDTHKSFTTHLYNAMKQVGIEVFMDEERIDRGEHISTSLLGAIENSRISIIIFSTNYAGSSWCLQELEKIMECYKTHQEVFPIFYDVHPSDVRKQQNAFGKAWERLTTRPSGSKGKKFTNNLKRVLAEAANLSGWDMQNYRTETELLDDVVKTITMRLDNSKYMFVAHHPVGLESRVQDIIQLLSSESNDIIIIGILGMGGIGKTTVAKTIYNEMGQSFVGKSFLANIREVWKQDNGQVYLQEQLISSIFKTRRIKLPNAGRGKSLIKEILCQKRVFLVLDDVNNEEQLKVLCGSREWFGQGSRIIITTRDQRLLQILQVDKVFSAREMDDNESIELFSWYAFKQALPERNFIELSRRVVSYCGGLPLALEILGSYLFDRERPYWESALSKLKQIPNGKIYEILKISHDGLSDKMEQELFLDICCFFIGKDRSYATQVLDGCGLYAEIGITHLIERSLVKVVKFENKNVLDMHDLLRDMGREIIREQSPEEPEKRTRLWFNDDVLNVLGNNIGTTAIKGLSLNMPRNNSIPLSTKAFKKMKRLRLLNFDNVQLDGDYGHLSKELRWLCWRRFLLKSWPADFNLEKIVAIDLKWSNLTKAWEKSQVLEGLKILNLSHSHCLTETSDFSNLPYLEKLILKDCRGLSMIHPSIGNLRHLIMLNLKNCNGLEHLPRSIYDLKSLRTLNLFGCSKIERLDEDIEKMESLTVLVATRTAITQAPISLVRLKNIKYVSLCGYEGLSHDIFPSLMLSWMPPTNHSRSLFQAFGIMPSLIKIFSHPLFAKSREIFKAKPRPSQVSCKKTPALIGFGEQVHKERSETFMSSTTIHVGEFNQVIDTLLRSISQRCSERGFGVNSFPGDNYPHWRNFKGEGSSICFEVPKIIGKSLKGLILCIIYLSSQDNMTSVYYPVGILVSNHTKATIKLYQKNATTASNDEDNWRDIISNLETGNRVEVIVTFACELKVKHTVVYLVYDEDAVKRIMY	1030

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral902g00001	1030	Gene3D	-	206	373	IPR027417	-
	Pral902g00001	1030	SMART	till_3	41	182	IPR000157	GO:0007165
	Pral902g00001	1030	FunFam	Disease resistance protein (TIR-NBS-LRR class)	39	210	-	-
	Pral902g00001	1030	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	213	473	IPR027417	-
	Pral902g00001	1030	Gene3D	-	40	205	IPR035897	-
	Pral902g00001	1030	ProSiteProfiles	TIR domain profile.	40	208	IPR000157	GO:0007165
	Pral902g00001	1030	SUPERFAMILY	"Winged helix" DNA-binding domain	449	558	IPR036390	-
	Pral902g00001	1030	SUPERFAMILY	Toll/Interleukin receptor TIR domain	36	185	IPR035897	-
	Pral902g00001	1030	Gene3D	-	378	462	IPR042197	-
	Pral902g00001	1030	Pfam	Leucine rich repeat	680	738	IPR001611	GO:0005515
	Pral902g00001	1030	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	42	757	IPR044974	GO:0006952
	Pral902g00001	1030	Pfam	NB-ARC domain	224	448	IPR002182	GO:0043531
	Pral902g00001	1030	SUPERFAMILY	L domain-like	536	801	-	-
	Pral902g00001	1030	PRINTS	Disease resistance protein signature	243	258	-	-
	Pral902g00001	1030	PRINTS	Disease resistance protein signature	725	741	-	-
	Pral902g00001	1030	PRINTS	Disease resistance protein signature	320	334	-	-
	Pral902g00001	1030	PRINTS	Disease resistance protein signature	413	427	-	-
	Pral902g00001	1030	Pfam	TIR domain	42	206	IPR000157	GO:0007165
	Pral902g00001	1030	Gene3D	Ribonuclease Inhibitor	551	821	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral902g00001	Pral-Chr902	6887	13456	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral902g00001	634	774	WRKY Transcription Factor Family	AT4G12020	35.417	4.73e-11	65.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral902g00001	-		-	pcin:129288830	1418.68