Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral901g00013 ATGTATAGCGGCACGGGTGTGGCAGGAAGAACTCGGTCTAGACAAGGAAACGCTGGAAAACCATACTTTGAGGATGATAATAACCACAGGAAACAGCATGAGGCTGAGGAAATTACGTCTCGAGACGACTGGTGCTCTATCGATACTGTATCCGACGACGAGGACGTGATTTTGATCGAAAGCGCTATACAAGATGATGACAATAAGGAGGACATAGGACGAACTCAGCCCAGACAAGCACGTGAGGATTGTGATGAAACTGCAAGCGATATTGGCTCTTCTGATGTTGGTGGTAGTGACCATAATGGCTTTACTAGAAGCCGATGTATTGCCAGAAGAACTCGGTCTCATTTCCGTGCTTCTAAATTTAGAAACACTAAATCGGGGACCTTCAGCAATCCCATTAACATCGACGATGAGGAAAAGGAGAATGAAACAACAAATGACATCCCCATCCGTCAGGAGTCTCTCCATGGTGAGGAAGTGATGCCTCTTGAGAACTCCGCTTCCTCAAGTGATGAGGAAGTAAATCCAAAAGTGATGAGGAAGCGAAATCCAAAAGTTACGCCTAACCGGAGAAGAAAACAGTTTGATGGTTTCAAGATTCTTCCGGATCATCCCCACAGTAAGGGAGTGGCGCCTCTTGAAAAACCCGCTTCCTCAAGTGACGAGGAAGGAATTTCAGAAGTCATGAGGATGCGAAGTCCAGGAGTTACTAATAACGAGAGAAGAAAACAGTTTGATGGTTTCGAGATTCTTCCGGATCATCCCCTTAGTGAGGGAGTGGTGCCTCTTGAAAACCCCGCTTCCTCAAGCGATGAGGAAGGAAATCCAGAAGTTATGAGGAAGCGAAGTCCAGAGGTTACCCCTAATCGGAGAAGAAAACAGTTTGATGGTTTCGAGATTCTTCCGAATCATCCCCATAGCGAGGGAGTGGCGCCTCTTGAGAACCCCGCTTCCTCCAGTGATGAGGAAGGAAATCCAGAAGTTATGAGGAAGCGAAGTCCTGAAGTTACCCCTAACCAGAGAAGAAAACAGCTTGATGGTTTCGAGATTCTTCCGGATCATCCCCATAGCGAGGGAGTGGCGCCTCTTGAAAACCCCGCTTCCTTAAGTGATGAGGAAGGAAATCCAGAAGTTATGAGGAAGCGACTTAAAGTGTCCCGGCCAGTGTCTGATGATGAATTAGCTAAACTATGGGCTGAGTCGGACAAGGGTCTCTATGATTGTGAGGATAACGACGGAACTCCAGAAGATAGTAAACTAGAGAAATCAGAGCCCGAGGAAGAAGATAGTGAACTGCGTGTTCCTAGTGCTTGTGATGATGAGGCAGGAATTCCAGAAGAGATCAAGCCATGTCCATCATCAAAGTCTACTTCCGGGACTGAGGCGTCGCAGCCTCTTGAGAAATTAGAGGCGGAGGAAAAATCTTTTCTATGGGCTGAGATGGAGGATGGTCTAGCTTGTGAAGAAGTTACTCCTGATCAGGTTGACAATGAGCATTGTGATGACTCACGTGCGGAAGGTGAAGATAGTGTAGCTGCTCGTTGTCAGCGAGGGGATCATGTTCCTATAATGAACGATGAGATTGGGATAGTGTGTAAATATTGCTCACATCTGATTCGGGACATCAAAGATTGTGACCCTGAGTTTGGCAAAAATCCATCGGGAAAATCAGGTGGGAGATACTCTTATCGTTCGGAGGATTCTAACGACTCTTTCTCTGTTGATACTGAGCATGAAAATTCTGTTTGTGATGGTAAATGTTCCGGATTTGTTACTTATGCTCCTCCCACCGGAACTGTGTGGGATATAATTCCAAGAGCGAAGTGGAGGATGTACGATCATCAGGTGGAAGCTTTTGAATTTCTTTGGACGAACTTAGCTGGTGGGACAGTTCTGGACGAGTTGGAAGATCAGTTAGATTTTGCCAGTGGAAATGGCTGCATTATATCACATGCTCCTGGCACTGGCAAAACTTTTCTTACCATTGTCTTTCTCAGGGCTTTCATGAGGAGGTATCCAAATTGCAGACCCATGATCATAGCTCCAACCAATATTCTCCACACATGGGAGAAAGAGTTGAAGAAGTGGGAACTAGGTGATCCCGTTCCCTTTCATAACTTGAACAGGCCTGATCTTTCCGGGGAGGAGACTAAAACTGCCATGACCCGTCTTCGGAGGTACGGTGGTCGTGCACGTGCACACAATAATCAAAATGCTATCCGAGGGACAAAGATTTTTTCCTGGAAAGAGTCTTCAAGCATATTAGGAATTAGCTATACATTGTTTGATAGGCTTGCTAGAAAGGGCTCCGATACTGTAAAGAATGCCCTTTTTGAACTTCCAGGGTTACTAGTGCTTGATGAAGGTCACACCCCTCGGAATGAAAGGAGTCTCATGTGGGAAGCATTGTCAAAAGTAAAGACAAAGAGACGGATCTTACTCTCTGGTACTCCCTTTCAGAATAACTTTAAGGAGCTTAATAATACACTCCGGTTGGCCAAGCCAAGGTTGGCAGAAACCAAAAGGAATTTGGAATATCTGCTAAAATCATATGACAGAGTGGAGAGTAACAGTGAAAGAAGGGAGATAGTTGCTAATATCAGAGACTTGATCAAACCATTCGTGCATGTGCACAAGGGTACCGTCCTACAAGAGCGTCTTCCTGGGTTGATGGAATCTGTGGTTAATTTAATGCCATCTCAGACACAGATGTCAACTTTTGAGAACATTCGGCGGTTAAGGGAGGGCAGGGAGGGGTCCTCTAACTGGTTCAAATTTGAATATCTGATGTCTGTAGCTTCTGTGCATCCTTCACTTTTTGTCAATGAGCTTACCAACTTGCCAGAAAGAGAAAGGGTTGAATTGAATTCGGGGTTAGAAGGACTAGAATCGTCGCCAGAGTGTGGAGCCAAAACAAGGTTTGTAATGGACTTCGTCCAGCAAATTGTGCGCATGAAGGAAAAAGTTCTGATTTTTAGTCAATATATTGTTCCATTGACCTTTCTGGCAAACCACATCAAATCGTGCTTTGATTGGAATGAAGGAGAGCAGATGATGGTAGTTCACGGGAAGACCCATGAAGGGACGCGACAGGCTTCAATTGATGCATTCAATGATCCAAGCAGCAAAGCAAGGGTAATGCTGGCATCAACCAAGGCTTGTTATGAAGGGATCAATCTGGTTGGAGCTTCAAGGGTTATTTTACTGGACACCTTATGGAACCCTTCAGCAGAAAGGCAGGCTGTGTCTCGTGCTTATCGGATTGGACAGAAGAAAGTTGTGTACACTTACCGTCTCATAACCGCAGGGACATGGGATGAACAGAAACTTTATATTCAAGCTCAGAAGGATCAATTGTCTGAGTCGGTGTTTTTTGTTTCCGACGAAGATGACCGTTGCCAAAATATGTCGCCCGGTGGTTTTGAAGATAAACTTTTGGAAAAGATGGGACGTAAATTTGGAATAAAAATCACTAAAAGGGGAGTTACAATTTTGCTTGAAAGTGAAAAGTAA 3519 0.4493 MYSGTGVAGRTRSRQGNAGKPYFEDDNNHRKQHEAEEITSRDDWCSIDTVSDDEDVILIESAIQDDDNKEDIGRTQPRQAREDCDETASDIGSSDVGGSDHNGFTRSRCIARRTRSHFRASKFRNTKSGTFSNPINIDDEEKENETTNDIPIRQESLHGEEVMPLENSASSSDEEVNPKVMRKRNPKVTPNRRRKQFDGFKILPDHPHSKGVAPLEKPASSSDEEGISEVMRMRSPGVTNNERRKQFDGFEILPDHPLSEGVVPLENPASSSDEEGNPEVMRKRSPEVTPNRRRKQFDGFEILPNHPHSEGVAPLENPASSSDEEGNPEVMRKRSPEVTPNQRRKQLDGFEILPDHPHSEGVAPLENPASLSDEEGNPEVMRKRLKVSRPVSDDELAKLWAESDKGLYDCEDNDGTPEDSKLEKSEPEEEDSELRVPSACDDEAGIPEEIKPCPSSKSTSGTEASQPLEKLEAEEKSFLWAEMEDGLACEEVTPDQVDNEHCDDSRAEGEDSVAARCQRGDHVPIMNDEIGIVCKYCSHLIRDIKDCDPEFGKNPSGKSGGRYSYRSEDSNDSFSVDTEHENSVCDGKCSGFVTYAPPTGTVWDIIPRAKWRMYDHQVEAFEFLWTNLAGGTVLDELEDQLDFASGNGCIISHAPGTGKTFLTIVFLRAFMRRYPNCRPMIIAPTNILHTWEKELKKWELGDPVPFHNLNRPDLSGEETKTAMTRLRRYGGRARAHNNQNAIRGTKIFSWKESSSILGISYTLFDRLARKGSDTVKNALFELPGLLVLDEGHTPRNERSLMWEALSKVKTKRRILLSGTPFQNNFKELNNTLRLAKPRLAETKRNLEYLLKSYDRVESNSERREIVANIRDLIKPFVHVHKGTVLQERLPGLMESVVNLMPSQTQMSTFENIRRLREGREGSSNWFKFEYLMSVASVHPSLFVNELTNLPERERVELNSGLEGLESSPECGAKTRFVMDFVQQIVRMKEKVLIFSQYIVPLTFLANHIKSCFDWNEGEQMMVVHGKTHEGTRQASIDAFNDPSSKARVMLASTKACYEGINLVGASRVILLDTLWNPSAERQAVSRAYRIGQKKVVYTYRLITAGTWDEQKLYIQAQKDQLSESVFFVSDEDDRCQNMSPGGFEDKLLEKMGRKFGIKITKRGVTILLESEK 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral901g00013 1172 MobiDBLite consensus disorder prediction 1 42 - -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 276 301 - -
Pral901g00013 1172 Gene3D - 599 878 IPR038718 -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 62 88 - -
Pral901g00013 1172 CDD SF2_C_SNF 972 1102 - -
Pral901g00013 1172 Pfam Helicase conserved C-terminal domain 983 1091 IPR001650 -
Pral901g00013 1172 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 46 1158 IPR044567 GO:0080188
Pral901g00013 1172 SMART helicmild6 1002 1091 IPR001650 -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 326 341 - -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 551 577 - -
Pral901g00013 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 846 IPR027417 -
Pral901g00013 1172 Pfam SNF2-related domain 644 917 IPR000330 GO:0005524|GO:0140658
Pral901g00013 1172 Coils Coil 839 859 - -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 61 108 - -
Pral901g00013 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 640 838 IPR014001 -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 23 42 - -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 376 448 - -
Pral901g00013 1172 SMART ultradead3 609 849 IPR014001 -
Pral901g00013 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 979 1139 IPR001650 -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 191 205 - -
Pral901g00013 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 1126 IPR027417 -
Pral901g00013 1172 Gene3D - 890 1156 IPR027417 -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 120 469 - -
Pral901g00013 1172 MobiDBLite consensus disorder prediction 136 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral901g00013 Pral-Chr901 57992 62354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral901g00013 989 1126 RAD5 or RAD16-like Gene Family AT1G11100 35.507 4.14e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral901g00013 SNF2_N 4.5e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral901g00013 K10875 - jre:108991587 609.372