Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral896g00001 ATGGGGAAAAGGAAGATTGCGATTGAGAGGATTGATGATATACCGAACAGGCAAGTCACTTTCTCAAAGAGACGAAGTGGTTTGGTCAAGAAGGCAAGGGAGCTTGCGATCCTCTGTGACGTACAAGTTGGGGTCATCGTCTTCTCGAGCACTGATAAGCTCTACGAATATGGAAGCTCCAGCCTGGAGTCAATAATTGGGCGCTACCATAAACAGAAAGAGGAACATCCGCTTATGAATGCAGCTTCAGAAGCCAAGTTTTGGCAAAGAGAAGCCACGGTCTTGAGGCAAGAACTTCAACAGTTGAGGGAAATGCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTTGGCATTAACGAAATGAACGATTTGGAAAACCAACTGAAGATGAGTTTAAAACGTGTCCAGGTCAGAAAAGATCAAATCTTAACTGATGAGATTAAAGAGCTACAGCAAAAGGGAAATCAAGTTTGTCAAGAAAATGTTGAACTTTATGAAAGGATACAATTCATTAGTAAAGAAAATGCAGAGTTGAAAAAGATTTGTGAAGCAAGGGTTATAAATGATGAAAATGAGAGTTTCAATCCTCCATGCACTAGCAACCTGCAGTTGAGCCAGCCACAATCTCAATCGAGTGAGCCACCAACCAAAGCTATGGAGATGGGCCATGAAGAATATCGAAGGAAGAGTGGAGAAAACCGTCAGCTCCCCTGGTCTGCTCGCTTGCGTCTCCCTTCTCCTCTGTTCGGCGTGCTCTGCTCTTCCGTTTCGCGTCTTGCTCTGCGGCGTGTTCTCTGGTCCTTTCTCCGGCCGCGCCCAGGAGAAGAAGAAGATGAAGCCGCCGGTGATGATGGACTGGACCGATGGAAGGACCTCTCTGTTCGTTCCAGGTCCGTGTGCGCCGTCCAGCTCCTCCTCTGTTTTCTTTTCTTCGCGCAGCTCCAGCCTCCCTTTCGTTCGGCGTCGCGCGTGTGTGTGTTCTCTCTCTCTGCCGCCGCTCAGCTTTTGTTTTCCCCTTCGCTGTTTTTTATTCGGCGTGTTCGGGTGTGTTTCTTTTTGTTGCCGCCGCGCCTCCTGGAGAAGATGAAGAATAGATGA 1101 0.4777 MGKRKIAIERIDDIPNRQVTFSKRRSGLVKKARELAILCDVQVGVIVFSSTDKLYEYGSSSLESIIGRYHKQKEEHPLMNAASEAKFWQREATVLRQELQQLREMHRQLMGEQLSGFGINEMNDLENQLKMSLKRVQVRKDQILTDEIKELQQKGNQVCQENVELYERIQFISKENAELKKICEARVINDENESFNPPCTSNLQLSQPQSQSSEPPTKAMEMGHEEYRRKSGENRQLPWSARLRLPSPLFGVLCSSVSRLALRRVLWSFLRPRPGEEEDEAAGDDGLDRWKDLSVRSRSVCAVQLLLCFLFFAQLQPPFRSASRVCVFSLSAAAQLLFSPSLFFIRRVRVCFFLLPPRLLEKMKNR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral896g00001 366 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pral896g00001 366 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral896g00001 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 - -
Pral896g00001 366 MobiDBLite consensus disorder prediction 195 217 - -
Pral896g00001 366 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Pral896g00001 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral896g00001 366 MobiDBLite consensus disorder prediction 195 233 - -
Pral896g00001 366 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral896g00001 366 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral896g00001 366 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Pral896g00001 366 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral896g00001 366 Coils Coil 85 112 - -
Pral896g00001 366 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral896g00001 366 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral896g00001 366 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral896g00001 366 MobiDBLite consensus disorder prediction 219 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral896g00001 Pral-Chr896 5005 12059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral896g00001 1 221 MADS-box Gene Family AT4G37940 51.351 3.52e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral896g00001 K-box 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral896g00001 K09264 - gmx:100808145 263.848