Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral892g00003 | ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCCACCCAGCAATACCAGCAGCAGCAACCCTACATGATGATGCCACCGCAGGCTCAGGCACCGCCTATGTGGGCTCCTTCTGCCCAGCCCCCGCCGCCGCAGCAGGCCGTTGCTCCGCCGCAACCCACCCAACATGTCCAGCCGAGTAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTATCTGTATAATTGTTTTGCGCATACCGGCGAGGTGGGTTCTGTGAAAGTCATTCGGAATAAGCAAACTAATGCATCGGAAGGTTATGGATTTATTGAGTTTTTCACTCGTGCTGCTGCGGAGAGAACTCTTCAAACATTTAATGGCTCAATTATGCCTAATGGTGGGCAAAACTTTAGATTGAATTGGGCATCTTTTAGTTCGGGTGATAGGCGTCATGATGACACCCCAGATTACACAATTTTTGTGGGAGACTTGGCTGCCGATGTCACAGATTACCTGCTTCAGGAGACATTTCGTGCTAGATATCCCTCAGTTAAGGGTGCAAAAGTGGTAATTGATAGGCTCACTGGGCGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATGCAAGCTATGACTGAGATGCAGGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTTACGGACGATCATTTGAGGCAAGTTTTTGGCCAATATGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTCGCTGATAGGTAA | 945 | 0.4772 | MMQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPPQQAVAPPQPTQHVQPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVGSVKVIRNKQTNASEGYGFIEFFTRAAAERTLQTFNGSIMPNGGQNFRLNWASFSSGDRRHDDTPDYTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVKFGDENEQMQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELIHVKIPAGKRCGFVQFADR | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral892g00003 | 314 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 61 | 314 | - | - | |
Pral892g00003 | 314 | FunFam | Polyadenylate-binding protein RBP45 | 10 | 155 | - | - | |
Pral892g00003 | 314 | Gene3D | - | 163 | 239 | IPR012677 | - | |
Pral892g00003 | 314 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 164 | 243 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | CDD | RRM1_SECp43_like | 72 | 152 | - | - | |
Pral892g00003 | 314 | CDD | RRM2_SECp43_like | 163 | 242 | - | - | |
Pral892g00003 | 314 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 269 | 314 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | MobiDBLite | consensus disorder prediction | 12 | 30 | - | - | |
Pral892g00003 | 314 | Gene3D | - | 8 | 159 | IPR012677 | - | |
Pral892g00003 | 314 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Pral892g00003 | 314 | MobiDBLite | consensus disorder prediction | 31 | 55 | - | - | |
Pral892g00003 | 314 | MobiDBLite | consensus disorder prediction | 239 | 269 | - | - | |
Pral892g00003 | 314 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 166 | 229 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 271 | 313 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 73 | 138 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | FunFam | Polyadenylate-binding protein RBP45C | 156 | 248 | - | - | |
Pral892g00003 | 314 | Gene3D | - | 246 | 314 | IPR012677 | - | |
Pral892g00003 | 314 | MobiDBLite | consensus disorder prediction | 243 | 269 | - | - | |
Pral892g00003 | 314 | SUPERFAMILY | RNA-binding domain, RBD | 45 | 149 | IPR035979 | GO:0003676 | |
Pral892g00003 | 314 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 71 | 151 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | SMART | rrm1_1 | 270 | 314 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | SMART | rrm1_1 | 72 | 147 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | SMART | rrm1_1 | 165 | 239 | IPR000504 | GO:0003723 | |
Pral892g00003 | 314 | SUPERFAMILY | RNA-binding domain, RBD | 161 | 313 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral892g00003 | Pral-Chr892 | 16299 | 19590 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral892g00003 | 165 | 313 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 27.273 | 3.30e-10 | 58.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral892g00003 | - | - | gmx:100796848 | 470.7 |