Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral892g00002 ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCCACCCAGCAATACCAGCAGCAGCAACCCTACATGATGATGCCACCGCAGGCTCAGGCACCGCCTATGTGGGCTCCTTCTGCCCAGCCCCCGCCGCCGCAGCAGGCCGTTGCTCCGCCGCAACCCACCCAACATGTCCAGCCGAGTAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTATCTGTATAATTGTTTTGCGCATACCGGCGAGGTGGGTTCTGTGAAAGTCATTCGGAATAAGCAAACTAATGCATCGGAAGGTTATGGATTTATTGAGTTTTTCACTCGTGCTGCTGCGGAGAGAACTCTTCAAACATTTAATGGCTCAATTATGCCTAATGGTGGGCAAAACTTTAGATTGAATTGGGCATCTTTTAGTTCGGGTGATAGGCGTCATGATGACACCCCAGATTACACAATTTTTGTGGGAGACTTGGCTGCCGATGTCACAGATTACCTGCTTCAGGAGACATTTCGTGCTAGATATCCCTCAGTTAAGGGTGCAAAAGTGGTAATTGATAGGCTCACTGGGCGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATGCAAGCTATGACTGAGATGCAGGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTTACGGACGATCATTTGAGGCAAGTTTTTGGCCAATATGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTCGCTGATAGGAGCTGTGCTGAAGAGGCTCTGCGGATTCTAAATGGAACGCTGTTGGGCGGACAAAATGTCCGTCTTTCATGGGGGCGCAGTCCTTCAAACAAACAGGCTCAGCCAGATCCAAGCCAGTATGGGGGATATTATGGGTATGCTCAAGGGTATGAGAATTACGGATACCCTCCTGCTGCTACACAGGATCCCAACATGTATGGAAGCTATCCAGGTTATGCTAACTATCAACCACCACAGCAGCAACAGCAAATGGGGTATAGCTAA 1206 0.4818 MMQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPPQQAVAPPQPTQHVQPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVGSVKVIRNKQTNASEGYGFIEFFTRAAAERTLQTFNGSIMPNGGQNFRLNWASFSSGDRRHDDTPDYTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVKFGDENEQMQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELIHVKIPAGKRCGFVQFADRSCAEEALRILNGTLLGGQNVRLSWGRSPSNKQAQPDPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral892g00002 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Pral892g00002 401 MobiDBLite consensus disorder prediction 387 401 - -
Pral892g00002 401 Gene3D - 246 350 IPR012677 -
Pral892g00002 401 CDD RRM1_SECp43_like 72 152 - -
Pral892g00002 401 CDD RRM2_SECp43_like 163 242 - -
Pral892g00002 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 354 - -
Pral892g00002 401 MobiDBLite consensus disorder prediction 12 30 - -
Pral892g00002 401 MobiDBLite consensus disorder prediction 1 66 - -
Pral892g00002 401 MobiDBLite consensus disorder prediction 31 55 - -
Pral892g00002 401 MobiDBLite consensus disorder prediction 380 401 - -
Pral892g00002 401 Gene3D - 163 239 IPR012677 -
Pral892g00002 401 FunFam Polyadenylate-binding protein RBP45C 156 247 - -
Pral892g00002 401 FunFam Polyadenylate-binding protein RBP45C 248 351 - -
Pral892g00002 401 FunFam Polyadenylate-binding protein RBP45 10 155 - -
Pral892g00002 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Pral892g00002 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 138 IPR000504 GO:0003723
Pral892g00002 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Pral892g00002 401 Gene3D - 8 158 IPR012677 -
Pral892g00002 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Pral892g00002 401 SUPERFAMILY RNA-binding domain, RBD 149 259 IPR035979 GO:0003676
Pral892g00002 401 MobiDBLite consensus disorder prediction 243 269 - -
Pral892g00002 401 MobiDBLite consensus disorder prediction 237 269 - -
Pral892g00002 401 SUPERFAMILY RNA-binding domain, RBD 254 367 IPR035979 GO:0003676
Pral892g00002 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 151 IPR000504 GO:0003723
Pral892g00002 401 SMART rrm1_1 72 147 IPR000504 GO:0003723
Pral892g00002 401 SMART rrm1_1 165 239 IPR000504 GO:0003723
Pral892g00002 401 SMART rrm1_1 270 337 IPR000504 GO:0003723
Pral892g00002 401 SUPERFAMILY RNA-binding domain, RBD 46 149 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral892g00002 Pral-Chr892 15535 19590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral892g00002 268 347 Eukaryotic Initiation Factors Gene Family AT4G34110 34.483 1.55e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral892g00002 - - gmx:100796848 591.267