LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral890g00003	ATGTTTGGGTTTAGGAAAGCAGCCCCTCCAAAGGAGGAGAACCCCGCAGGCTCAGAATCTTCCGCTCCTCCTGAGACAACCGTTAAACCAGAAAGAAGAACAACCTCAGAACCTGTCATACCAGCACCAAAATCCAAAGGAAACTACTTTGATGACGACGATGGCGATGACGATTGGGGAAGAGGAAGAAAGACTTCTGCCACTTCATCATCTTCCTCGGCTGCTGCTAAAAACAGGTACAAGAACAATTTCCAGGACTCTGGGGGCCTAGAGAACCAGAGTGTCCAAGAGCTGGAAAACTATGCTGTATACAAGTCTGAAGAGACAACAAAGGATGTTAATAATTGTCTGAGGATAGCTGAGGACATCAAAGGGGATGCTACAAGGACCCTTGACATGCTGCACCAACAGGGTGAGCAAATCCACAGGACCCACAATATGATTGTTGAGACCGAGAAGGATTTAAGTCGGGGTGAAAAACTGCTGAACAATCTTGGAGGCATGTTCTCTATGCCCTGGAAGCCAAAGAAGACCAGGGAGATTAAAGGCCCCATAATTACACCAGACAAGCCATCCAAGACAAATGATAAGCAGCATAAGGAAGAGAGGGAAAAATTAGGCCTAAATGATGGTAAAGGAAAGGCAGTTTCTAAAACACCTCCTTCTGAGCCAACAAATGCATATCAGAAAATTGAGATGGAGAAGAACAAACAAGATGGCGCACTTGATGATCTGAGTAATATCTTGGGCGATTTAAAGGGTATAGCAGTTGACATGGGAACTGAACTTGACAGGCAAAACAAAGCACTTGATCATCTTAGTGATGATGTGGATGAACTGAATTCTCGAGTTAAGGGTGCCAACCAGCGTGCTCGTAAACTGCTAGCAAGTTAG	894	0.4508	MFGFRKAAPPKEENPAGSESSAPPETTVKPERRTTSEPVIPAPKSKGNYFDDDDGDDDWGRGRKTSATSSSSSAAAKNRYKNNFQDSGGLENQSVQELENYAVYKSEETTKDVNNCLRIAEDIKGDATRTLDMLHQQGEQIHRTHNMIVETEKDLSRGEKLLNNLGGMFSMPWKPKKTREIKGPIITPDKPSKTNDKQHKEEREKLGLNDGKGKAVSKTPPSEPTNAYQKIEMEKNKQDGALDDLSNILGDLKGIAVDMGTELDRQNKALDHLSDDVDELNSRVKGANQRARKLLAS	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral890g00003	297	CDD	SNARE_Qc	235	293	-	-
	Pral890g00003	297	MobiDBLite	consensus disorder prediction	181	226	-	-
	Pral890g00003	297	MobiDBLite	consensus disorder prediction	64	92	-	-
	Pral890g00003	297	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	232	294	IPR000727	-
	Pral890g00003	297	FunFam	SNAP25 homologous protein SNAP33	89	166	-	-
	Pral890g00003	297	Gene3D	-	215	296	-	-
	Pral890g00003	297	SMART	tSNARE_6	227	294	IPR000727	-
	Pral890g00003	297	SMART	tSNARE_6	98	165	IPR000727	-
	Pral890g00003	297	CDD	SNARE_SNAP25N_23N_29N_SEC9N	100	164	IPR044766	GO:0005484\|GO:0031201
	Pral890g00003	297	FunFam	SNAP25 homologous protein SNAP33	229	296	-	-
	Pral890g00003	297	SUPERFAMILY	SNARE fusion complex	226	295	-	-
	Pral890g00003	297	Coils	Coil	263	297	-	-
	Pral890g00003	297	MobiDBLite	consensus disorder prediction	47	63	-	-
	Pral890g00003	297	SUPERFAMILY	SNARE fusion complex	93	164	-	-
	Pral890g00003	297	MobiDBLite	consensus disorder prediction	181	211	-	-
	Pral890g00003	297	MobiDBLite	consensus disorder prediction	1	92	-	-
	Pral890g00003	297	Gene3D	-	89	167	-	-
	Pral890g00003	297	PANTHER	SYNAPTOSOMAL ASSOCIATED PROTEIN	65	295	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral890g00003	Pral-Chr890	46422	49132	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral890g00003	223	292	SNARE and Associated Proteins	AT3G09740	40.000	9.54e-06	44.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral890g00003	K18211		-	gmx:100806781	402.905