Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral875g00069 ATGGCAAAACCTGGGCGAGGCCGTCGCTCACCGCCGTCTGGTTCCATCTCGGGCTCCTCATCGCGCTCTAGGTCCTCCTCTCCCTCCGATTCCCGCTCCAGCTCTCGCTCTCGCTCCCTTTCCCGCTCTCCCTCTCGCTCCAGATCCTTCTCCTCGTCCTCTTCTCCATCCCGCAGTGTCAGTTCAGGAAGCCGAAGTCCCCCTCCTCCAAGGAGGAAAAGTCCTGCTGAAGCAGCTAGGAGAGGTAGATCTCCTCCACCCTCATCTAAAAGGATATCTCCACCCCCCAGGAAACCTTCCCCTGTTCGTGAATCACTTGTTCTTCACATAGACAAACTCAGCAGGAATGTCCATGAAGGCCATTTGAAAGAAATATTTAGTAACTTTGGTGAGGTTGTAAATGTGGAGTTGGCAATGGATCGAACTGTTAACCTTCCTAAAGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAAGCCTTATTGTACATGGATGGTGCCCAAATCGATGGTAATATTGTTAAGGCCAGATTTACCTTGCCACCAAGGCAGAAGGTTTCACCACCCTCAAAGGCTTCTGCTCTCCCTCCAAAGAGAGATGCTCCTAGAGCTGATAATGCTAGTGCAGATGCTGAAAAAGATGGGCCAAAGCGGCCAAGAGAATCTTCTCCTAGGAGAAGACCTCCTTCACCCCGAAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCACCAAGACGACTGGATTCTCCTGTTCGTCGTCGAATGGACTCACCATATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTATCTCCCCTGCTAGAGGCAGATCTCCAACTCCACCGAGGCGCCTTAGATCTCCTGCACGGGTCTCCCCCAGAAGGATGCGTGGAAGTCCAATTCGCAGGCGTTCTCCTCCTCCTCCAAGGCGCCGTTCACCACCTAGACGAGCTCGTAGTCCTAGAAGATCTCCGATCAGTCGCAGACGAAGTCGCTCTCCACCACGGAGATCTGCACGCTCACGATCAAGATCATTCTCACCACCTCCACGGAGAGGTCGGCCACCTATGAGGCGTGGAAGGTCATCATCATCCTACTCTGATTCGCCAAGTCCTCGCAAGTTATCCCGGAGATCCAGGAGTCGCAGTCCAAGAAGGCCTTTAAGAGGAAGAGGTAGCAGCAATAGCAGCAGCAGCAGCTCACCACCCCCAGCTCGCAGACCATAG 1236 0.5348 MAKPGRGRRSPPSGSISGSSSRSRSSSPSDSRSSSRSRSLSRSPSRSRSFSSSSSPSRSVSSGSRSPPPPRRKSPAEAARRGRSPPPSSKRISPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPSKASALPPKRDAPRADNASADAEKDGPKRPRESSPRRRPPSPRRRSPVPRRVGSPRRLDSPVRRRMDSPYRRGDTPPRRRPISPARGRSPTPPRRLRSPARVSPRRMRGSPIRRRSPPPPRRRSPPRRARSPRRSPISRRRSRSPPRRSARSRSRSFSPPPRRGRPPMRRGRSSSSYSDSPSPRKLSRRSRSRSPRRPLRGRGSSNSSSSSSPPPARRP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral875g00069 411 FunFam Serine/arginine-rich splicing factor SR45 3 191 - -
Pral875g00069 411 Gene3D - 13 192 IPR012677 -
Pral875g00069 411 MobiDBLite consensus disorder prediction 12 67 - -
Pral875g00069 411 MobiDBLite consensus disorder prediction 248 273 - -
Pral875g00069 411 SUPERFAMILY RNA-binding domain, RBD 94 191 IPR035979 GO:0003676
Pral875g00069 411 MobiDBLite consensus disorder prediction 1 103 - -
Pral875g00069 411 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 257 - -
Pral875g00069 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pral875g00069 411 CDD RRM_RNPS1 108 180 IPR034201 -
Pral875g00069 411 MobiDBLite consensus disorder prediction 206 231 - -
Pral875g00069 411 MobiDBLite consensus disorder prediction 391 411 - -
Pral875g00069 411 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pral875g00069 411 MobiDBLite consensus disorder prediction 183 411 - -
Pral875g00069 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 176 IPR000504 GO:0003723
Pral875g00069 411 MobiDBLite consensus disorder prediction 291 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral875g00069 Pral-Chr875 406489 411490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral875g00069 108 181 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 3.01e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral875g00069 K14325 - gmx:100783566 300.056