Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral875g00068 ATGGCAAAACCTGGGCGAGGCCGTCGCTCACCGCCGTCTGGTTCCATCTCGGGCTCCTCATCGCGCTCTAGGTCCTCCTCTCCCTCCGATTCCCGCTCCAGCTCTCGCTCTCGCTCCCTTTCCCGCTCTCCCTCTCGCTCCAGATCCTTCTCCTCGTCCTCTTCTCCATCCCGCAGTGTCAGTTCAGGAAGCCGAAGTCCCCCTCCTCCAAGGAGGAAAAGTCCTGCTGAAGCAGCTAGGAGAGGTAGATCTCCTCCACCCTCATCTAAAAGGATATCTCCACCCCCCAGGAAACCTTCCCCTGTTCGTGAATCACTTGTTCTTCACATAGACAAACTCAGCAGGAATGTCCATGAAGGCCATTTGAAAGAAATATTTAGTAACTTTGGTGAGGTTGTAAATGTGGAGTTGGCAATGGATCGAACTGTTAACCTTCCTAAAGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAAGCCTTATTGTACATGGATGGTGCCCAAATCGATGGTAATATTGTTAAGGCCAGATTTACCTTGCCACCAAGGCAGAAGGTTTCACCACCCTCAAAGGCTTCTGCTCTCCCTCCAAAGAGAGATGCTCCTAGAGCTGATAATGCTAGTGCAGATGCTGAAAAAGATGGGCCAAAGCGGCCAAGAGAATCAGCTTCTCCTAGGAGAAGACCTCCTTCACCCCGAAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCACCAAGACGACTGGATTCTCCTGTTCGTCGTCGAATGGACTCACCATATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTATCTCCCCTGCTAGAGGCAGATCTCCAACTCCACCGAGGCGCCTTAGATCTCCTGCACGTAGGGTCTCCCCCAGAAGGATGCGTGGAAGTCCAATTCGCAGGCGTTCTCCTCCTCCTCCAAGGCGCCGTTCACCACCTAGACGAGCTCGTAGTCCTAGAAGATCTCCGATCAGTCGCAGACGAAGTCGCTCTCCACCACGGAGATCTGCACGCTCACGATCAAGATCATTCTCACCACCTCCACGGAGAGGTCGGCCACCTATGAGGCGTGGAAGGTCATCATCATCCTACTCTGATTCGCCAAGTCCTCGCAAGTTATCCCGGAGATCCAGGAGTCGCAGTCCAAGAAGGCCTTTAAGAGGAAGAGGTAGCAGCAATAGCAGCAGCAGCAGCTCACCACCCCCAGCTCGCAGACCATAG 1242 0.5346 MAKPGRGRRSPPSGSISGSSSRSRSSSPSDSRSSSRSRSLSRSPSRSRSFSSSSSPSRSVSSGSRSPPPPRRKSPAEAARRGRSPPPSSKRISPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPSKASALPPKRDAPRADNASADAEKDGPKRPRESASPRRRPPSPRRRSPVPRRVGSPRRLDSPVRRRMDSPYRRGDTPPRRRPISPARGRSPTPPRRLRSPARRVSPRRMRGSPIRRRSPPPPRRRSPPRRARSPRRSPISRRRSRSPPRRSARSRSRSFSPPPRRGRPPMRRGRSSSSYSDSPSPRKLSRRSRSRSPRRPLRGRGSSNSSSSSSPPPARRP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral875g00068 413 MobiDBLite consensus disorder prediction 292 344 - -
Pral875g00068 413 MobiDBLite consensus disorder prediction 393 413 - -
Pral875g00068 413 MobiDBLite consensus disorder prediction 12 67 - -
Pral875g00068 413 SUPERFAMILY RNA-binding domain, RBD 94 191 IPR035979 GO:0003676
Pral875g00068 413 MobiDBLite consensus disorder prediction 1 103 - -
Pral875g00068 413 FunFam Serine/arginine-rich splicing factor SR45 3 191 - -
Pral875g00068 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 176 IPR000504 GO:0003723
Pral875g00068 413 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 259 - -
Pral875g00068 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pral875g00068 413 MobiDBLite consensus disorder prediction 183 413 - -
Pral875g00068 413 CDD RRM_RNPS1 108 180 IPR034201 -
Pral875g00068 413 Gene3D - 13 193 IPR012677 -
Pral875g00068 413 MobiDBLite consensus disorder prediction 206 231 - -
Pral875g00068 413 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pral875g00068 413 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral875g00068 Pral-Chr875 406489 411493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral875g00068 108 181 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 3.25e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral875g00068 K14325 - gmx:100783566 273.863