Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral875g00056 ATGGAGTACGACGACTCGTTTCAAACATGGCTACATGATGCTGAAATGGAATTGGATCTCTGTACTTTCTTCCCAGAATTTTGCACAGAGAAAATGTCTTCGTCTTCTTCTTCATCTTTGGATGTTGAAGTTACTGCGAATCAGAGAGAAAAAACTGATCACAATCATCAATTAGCAGATCAGACACTGTATCATCAAACTGAAACTAATTCCATTGCTCCTCTCACTTTCTCTGACGCTTCTGATGGAAATCTTCATGTTGATGCTGAGAATAGGGTATTGCCAGCTGCAAGGAAAAATTATGGTGTGAACTGCGAGATTGAGTGTGATGATGGAGCCATGAACAAGGGCCAACCAGAAGGAGACAAGTGGCATAGGAGCAGCAAAAAGACTGCTTTGCCCCTTCCGCAACACATAGTCGTTGAGAGAAAGCGAAGACGAGAAATTAACCAGAGGTTCTTGGCACTGTCAAAAGTGGTACCAGGCAATAAGAAGAAGGATAGAGCTTCTATACTTGGAGAAGCAGTGAAATACATGAAAGATCTTCAAGAACGCATCAAGAAGCTGGAGGAGAAGAACAAGAAGAAAGTGGTGGAATCAGTAGTTTTTGTGAAGAGATCTTCATCATCTTCTTGTCCATCTAGTGGTAATAATCAATATTATTGTAACCCTAGTTACGAGGAGCCAAACAGAAATGACGACAGCTTGAGCAACAGAAACAAAAGAAGGTGGAGTTTACTGGCTGAAGAAGAAATCATAATCGAAGCAAAAGTGATAGAAAGGAGTTTGCTGATTCGAGTTCATTGTGGGAATCACAACGCAATCCTTCCAACGTTGTTGGCTGCAATTTCTGAGTTTCATTTGATTGTGCTCACTGCTAATGCTATTCCTTTTGGGAAGCACATCGACATCACTGTCATTGCTCAGATGGGAGTTAATTTCTACATGAAGACGAAGGATATTGTGGACCGCTTGCGCGTGGCATTATCAAATGACAAAATTCCAAAATAA 1011 0.4105 MEYDDSFQTWLHDAEMELDLCTFFPEFCTEKMSSSSSSSLDVEVTANQREKTDHNHQLADQTLYHQTETNSIAPLTFSDASDGNLHVDAENRVLPAARKNYGVNCEIECDDGAMNKGQPEGDKWHRSSKKTALPLPQHIVVERKRRREINQRFLALSKVVPGNKKKDRASILGEAVKYMKDLQERIKKLEEKNKKKVVESVVFVKRSSSSSCPSSGNNQYYCNPSYEEPNRNDDSLSNRNKRRWSLLAEEEIIIEAKVIERSLLIRVHCGNHNAILPTLLAAISEFHLIVLTANAIPFGKHIDITVIAQMGVNFYMKTKDIVDRLRVALSNDKIPK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral875g00056 336 SMART finulus 139 188 IPR011598 GO:0046983
Pral875g00056 336 MobiDBLite consensus disorder prediction 207 231 - -
Pral875g00056 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 200 IPR036638 GO:0046983
Pral875g00056 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Pral875g00056 336 Pfam Helix-loop-helix DNA-binding domain 138 183 IPR011598 GO:0046983
Pral875g00056 336 Coils Coil 172 199 - -
Pral875g00056 336 Gene3D - 136 201 IPR036638 GO:0046983
Pral875g00056 336 MobiDBLite consensus disorder prediction 207 237 - -
Pral875g00056 336 PANTHER BHLH TRANSCRIPTION FACTOR 31 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral875g00056 Pral-Chr875 348772 351873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral875g00056 68 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.632 2.33e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral875g00056 HLH 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral875g00056 - - qsa:O6P43_001179 146.362