Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral875g00054 ATGTATGGCAGCAAATGTAGCAGTAAAGCTAATATGTATGCAAGGACAGATATTTCTACCAAACTTGTAATTTTGAAGCTGTACACATCTTTAGCTTTATGTGGATCTGTGGCCAAAAAACTTATAGAGAATGGAGAAGTCTTTCTACAAATGGTTGTGCAATCCATGGGAAAATCATACCCCGATGCTGTGAGAATAGAAGGCTTTAGGCTTTCTCAATGTCTATTGAGGTCCCAAGAGAATTGTTTGAAAGTGATGGATACATGTGGTGAAGCTCTTGTTGATGCCATAATTTGTGGGATGGAAGAAACAGGGATGCATTCTAGAAAATTTGTAAACAAGAATAGTTCTATATTAGTGGAAGCATGCCGATTGGCTTTAGTAACTCGTTGGGCAGGTGATCATCATATCAGTTTTTGGAAGCAAAGAATTGATAAAGTCCTCCTTAATCTTTTGATAGAAAATATTCATGATTTATCAGAGGAACATGTTTCTTCATTGGACAAACAAATATCCATTGCAAAGGAGGGTTTAAAAACCAATCATCAGCTTTGTGTGAGGGGTTATGTGTGGGACATTCTTGGTTGGCTCACAATACATTCTGGAGAAAATTTCAACCCATGTATCCATGGAAGTGGGCTCTACATCAACCTGATTATCATATGTGCATGCTTAACTTTTGAGGATGTGATTAAGAAATGGTGCCGAATATATCAAAAGGATGCTGATGATAGTTTTCAGAGTGAACCAGCATCAAGGGCTGTTCTAATGATGATTTATTCTCCCTGTAATTACATTTCATCCCAAGCCAGGCTCATATTTTCTAAGACATACTCTTCAGATCATTTCACTAGCTTAGCACATACGCTAGAATATGCATCATCACTTGAAAGTTATGGGTCGTTTGATAAGCTCCAACTTATCATCAACTTGATTGGATTGATCTCTTTTTTAAGTTTACCTCATCATCATACACTTGAAGGCAAATACATAAGGACAGTTGCTTTCATAGTAAAACGATGCTTAGGCAATGATATTGATGTATCAAGGCTCAGCTTAGCTCCTCATTTGCATACTACATTGTATGAAAAATCCTGTTGTTGGATGGACGCAGAAGATTGGGAAGGTTCCAATATTCTCTTGTTTTATGGTTTGTGGGGCTTAGCTGAAATGGTTCACCAATCTGCCCCTTTACAAAATAATTCTCGCATATCTATTGTTGATATAGAATATTTTGAAGCTCAGTTAGTTCGCAAACTCCTTGAGATTTGCAGTAATGCCTCTTTTACTCATGGTTTAAGATGGTATGCAGCTTATATTCTTAGTCATTTTGGATTTTATGGTTTCCCAAATGAACTAGGCAAAAGGGTTGGGAGATGCCTTAATGAGAAAGAATATGCAGATATTCAACTCTTTTTGGCCAATGGCAATACTTTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTTCATCATTGCTCCCTCCCGAAGTTAGTCTTGTTAAGGAAAAAAGAATCGATGGCCAATCCATTAGGGAAGTTCGTTTGTCTTCTCATGTTGATTATGAAGCATTAGTGAAGTTGTTGGAGTATGTATATGTGGGATACTTCCATGCCGATGAAGAAATTGTAAAGAAGTTGAAAATTCTTGCTAAGCGCTGCGATCTGCAGCCTCTCCTGCAAATGCTTCATAGACAAAGTCCAAAATGGGGAACATCATTCCCCAGCTTTGATCTCACTCCATCTCTTGTTTCAGCTGGAAGTTGTTTTTGGGATGTTATATTGGAATCTAAACAAGAAAAACTTGAAGGATGGACATGCTGTACATGCTCTCATTCAGTTCCACACTTGCATGTTCATAAAGTTATTTTACAATCTGGCTGTGACTACTTGCAAGGATTGTTTCGTTCAGGAATGAAAGAGAGTAATTCACCAATCATAAAGGTTCCTACTAGTTGGGAAGCAGCGAATAAGCTTGTGCACTGGTTCTATTCCAGTGAACTGCCAAATCCTCCATCCGGATGTTTGTGGGATAATATGGATGATGAGCAAAAACTATGCAGCTTACAGTCATACGTGGAGCTTTATTGGCTTTCAGAATTCTGGATTTTAGAAGATGTTCAAGAAGCTTGCTGGAACGTGATTGTATCTTATCTTGATAATTCAAAGCAGTTGTCCCTTAAAATGCTTAAAATGGCCGGCGACCTCTCTCTATGGAAATTAGCTGATGTAGCAGCAATTCACTTGGCTCCTTCATATAGTCAATTACGAGATTCTTGTGAACTTGAAGATTTGGATGATGCTCTTGTTCATTTAATTTGTTCTGCTTCTACTCAACTTAGCCAAAATGGATGA 2355 0.3796 MYGSKCSSKANMYARTDISTKLVILKLYTSLALCGSVAKKLIENGEVFLQMVVQSMGKSYPDAVRIEGFRLSQCLLRSQENCLKVMDTCGEALVDAIICGMEETGMHSRKFVNKNSSILVEACRLALVTRWAGDHHISFWKQRIDKVLLNLLIENIHDLSEEHVSSLDKQISIAKEGLKTNHQLCVRGYVWDILGWLTIHSGENFNPCIHGSGLYINLIIICACLTFEDVIKKWCRIYQKDADDSFQSEPASRAVLMMIYSPCNYISSQARLIFSKTYSSDHFTSLAHTLEYASSLESYGSFDKLQLIINLIGLISFLSLPHHHTLEGKYIRTVAFIVKRCLGNDIDVSRLSLAPHLHTTLYEKSCCWMDAEDWEGSNILLFYGLWGLAEMVHQSAPLQNNSRISIVDIEYFEAQLVRKLLEICSNASFTHGLRWYAAYILSHFGFYGFPNELGKRVGRCLNEKEYADIQLFLANGNTLSVHGVILAVRCSSLLPPEVSLVKEKRIDGQSIREVRLSSHVDYEALVKLLEYVYVGYFHADEEIVKKLKILAKRCDLQPLLQMLHRQSPKWGTSFPSFDLTPSLVSAGSCFWDVILESKQEKLEGWTCCTCSHSVPHLHVHKVILQSGCDYLQGLFRSGMKESNSPIIKVPTSWEAANKLVHWFYSSELPNPPSGCLWDNMDDEQKLCSLQSYVELYWLSEFWILEDVQEACWNVIVSYLDNSKQLSLKMLKMAGDLSLWKLADVAAIHLAPSYSQLRDSCELEDLDDALVHLICSASTQLSQNG 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral875g00054 784 SUPERFAMILY POZ domain 446 563 IPR011333 -
Pral875g00054 784 Gene3D Potassium Channel Kv1.1; Chain A 586 782 IPR011333 -
Pral875g00054 784 PANTHER OS06G0674800 PROTEIN 11 783 IPR044953 -
Pral875g00054 784 SUPERFAMILY POZ domain 616 716 IPR011333 -
Pral875g00054 784 ProSiteProfiles BTB domain profile. 467 541 IPR000210 GO:0005515
Pral875g00054 784 Pfam BTB/POZ domain 461 563 IPR000210 GO:0005515
Pral875g00054 784 Pfam BTB/POZ domain 616 676 IPR000210 GO:0005515
Pral875g00054 784 ProSiteProfiles BTB domain profile. 591 672 IPR000210 GO:0005515
Pral875g00054 784 Gene3D Potassium Channel Kv1.1; Chain A 449 566 IPR011333 -
Pral875g00054 784 SMART BTB_4 606 719 IPR000210 GO:0005515
Pral875g00054 784 SMART BTB_4 467 571 IPR000210 GO:0005515
Pral875g00054 784 CDD BTB_POZ_ZBTB_KLHL-like 616 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral875g00054 Pral-Chr875 344447 348551 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral875g00054 BTB 1.7e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral875g00054 - - mtr:25487018 1047.73