Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral875g00011 | ATGGCAATATGTCCGGCTTGCAACCTCAAAAAACGGTTTTGCTTGATGCTAATATTTTGTTTTGGCATCTTCCTTGTAAGTTCGATTAATGAAGATGGTTCAAATCTTTTGCGGTTCAAAGCTTCTCTTGCTGACACCCAAAATTATCTTCACAACTGGAATTCTTCTGATTTTACTCCTTGCAATTGGAAAGGTGTGCATTGTGATGATTCAATGGTAACTTCCGTAAATCTTCATCAGCTCAATCTGTCTGGTGCTTTATCTCCCACCATCTGTAACCTTCCACGGCTAGTTGAGTTGAATCTGTCGAAAAATTTCATTTCTGGTCCTATTCCTGTGGATTTTGTTGACTGTCGTAGTTTGGAGATATTAGACCTTTGCACAAATAGGTTCCATGGGGAACTTCTGATTCCTTTCAGCGAAATCACCACACTAAGAAAGCTTTATGTCTGTGAAAATTTCATGCATGGTGAAGTGCCTGAAGAGATTGGGAATTTAACTTCACTTGAAGAGCTAGTTATTTATAGCAACAACTTAACTGGGAGAATTCCCACATCAATCAGTAAGTTGAAGCAGCTTAAAATCATCAGGGCAGGTGTTAACAGCATCTCAGGTCCAATACCTGCGGAAATAAGCCAGTGTGAGAGCTTGCAGATATTAGGATTCTCACAGAATCAGCTAGAAGGGTCCATTCCAAGGGAGCTTCAAAAGCTTCAGAACCTTGCTGAGTTAAATCTATGGCAAAACTTTTTATCTGGTGAGATCCCTCCTGAGATTGGAAATCTTAGTAGCTTGCAATCGCTTGCTTTGCATCATAATTCATTTGGTGGAGCTCTCCCCAAGGAGCTTGGAAAGTTATCAAATTTACAAAGGTTGTACATATACACTAACCGCTTGAATGGCTCAATTCCGGTGGAGCTAGGGAACTGCACAAATGCAATTGAGATAGATCTGTCTGAAAATCGTTTAAGTGGAAATATTCCCAAAGAGTTGGGTCAGATCTCTGGTCTTACATTGCTTCATCTATTTGAAAACCTCCTGCAGGGAGACATACCTCAAGAGCTTGGGAATTTAAAGCTCTTAAAGAATTTAGACCTCTCCATAAATAACTTATCAGGTACAATACCACTAGTGTTTCAAAATCTTACATACATGGTGGATTTGCAGTTGTTTGATAATCACCTTCAGGGTAAAATTCCTCCTTATCTTGGATCTAATAGCAACCTTACAGTTCTTGATATATCCATGAATTATCTTATTGGTATGATACCTCCGCATCTTTGCCGCAATCAGAAATTGCAGTTCCTCAGTCTTGGGTCAAATAAATTGCTTGGCAATATTCCTCATGACCTGAAAATGTGCAAGCCTCTTGTGCAGCTAATGCTGGGAGACAACCAACTGACAGGAAGCTTCCCTCTTGAATTATATGAACTTCATAATCTTTCTGCCCTCGAACTTCAGCAGAACCGGTTCTCAGGACTAATAGACCATGGGATAGGTCGACTCAAGAATTTAAAGAGGCTGCTCTTATCAGATAACTATTTTTTAGGCTATCTTCCTCCTGAGATTGGGAATTTAACACAGCTTGTCTCATTCAACATTTCCTCTAATTTTCTCAGTGGAAGTATACCTCATGAGTTGGGAAACTGCATAAAACTCCAGAGGCTTGATCTGAGTAGAAACGGGTTCACTGGTGATCTTCCAGATGATATTGGCAAGCTGGTGAATCTGGAGCTGTTGAAACTTTCAGATAATAGACTCTCTGGAACAATACCGAGTGCTTTAGGGGACCTTTCACGTCTTACAGATTTGGAACTCGGCGGTAACTTGTTTTTTGGGAGCATTCCTTTTCATTTAGGACAATTAGCTGCTCTTCAGATTGCTCTTAACCTGAGTTATAACAAACTTTCTGGTACAATTCCTGACAGCCTTGGGAGCTTGCAAATGTTGGAAAGTCTTTATTTAAATGACAATCAGCTTGTTGGTGAAATTCCTACATCAATTGGTGACCTTCCCAGCCTCTTACTATGCAATGTTTCCAACAATAAACTGGTAGGGGTCATTCCAGACACGCCGGCATTTCGTAAGATGAATTTTACAAATTTTGCTGGAAACAATGGGTTGTGTCGAGTAGGTTCATATTATTGTCATCCATCTCATACTCCAAGCTGGTCCAGAGATGGTTCATCAAAGCAAAAGATAGTGAGCATTGTTTCTGCAGTGGTGGGATTTGTTTCTCTCATTTTCATAGTCTTTATATGTTGGGCCATGAAACGCCGTGGCTCTTCTTTTGTCTCAATTGAGGGGCAATCAAAACCTCATGTCCTAGATAACTATTACTTCCCTAAAGAAGGTTTCACATACCAGGATCTCTTGGAAGCTACTAGCAATTTTTCTGAAGCTTTGGTTATAGGAAGAGGAGCTTGTGGAACTGTCTACAAGGCTGTTCTGACCGATGGTGAGGTGATAGCTGTCAAAAAGTTGAATTCTCGTGGAGAAGGAGCAAATGTAGACAGAAGTTTCCTTGCAGAAATTTCGACTCTGGGAAAGATCAGGCACAGAAATATTGTGAAGCTGTTTGGATTCTGTTGTCATGAGGATTCTAATATTCTCTTGTATGAATACATGGAAAATGGTAGCCTTGGTGAACAACTTCATTCAGATCCAAACACATGTATATTGGGTTGGAGCAGTCGCTACAAAATTGCTCTTGGAGCAGCAGAAGGCTTGTGCTATCTTCATTACGATTGTAAACCTCAAATTATCCACCGCGATATAAAGTCAAACAATATATTGCTCGATGAGGTGTATCAGGCTCATGTTGGAGACTTTGGCCTGGCTAAGTTGGTCGACTTTTCCTACTCCAAATCCATGTCTGCTGTGGCAGGTTCATATGGCTACATTGCTCCTGAATATGCTTACACCATGAAGGTGACTGAGAAATGTGACATATATAGCTTCGGGGTAGTTTTGCTGGAACTAGTTACTGGCAGGTCACCTGTGCAACCTTTGGAGCAAGGTGGTGATCTAGTTACTTGGGTGAGAAGGTCAATTCAAGCGTCAGTACCAACATCTGAATTATTTGACAGAAGATTAAATCTGAGTGCACAAAAAACAATCGACGAGATGTCTCTTGTTCTCAAAATTGCTCTGTTTTGCACCAGTACATCCCCACTTAATAGGCCAACAATGAAAGAGGTCATTGCGATGTTGATTGATGCTAGGGAGTATGTCAACAATTCTCCATTGACTCCGACATCAGAATCCCCACTAGATGAAGATGCTTCGTCCAAAGGTGATCTAGAGTTTTAA | 3312 | 0.4067 | MAICPACNLKKRFCLMLIFCFGIFLVSSINEDGSNLLRFKASLADTQNYLHNWNSSDFTPCNWKGVHCDDSMVTSVNLHQLNLSGALSPTICNLPRLVELNLSKNFISGPIPVDFVDCRSLEILDLCTNRFHGELLIPFSEITTLRKLYVCENFMHGEVPEEIGNLTSLEELVIYSNNLTGRIPTSISKLKQLKIIRAGVNSISGPIPAEISQCESLQILGFSQNQLEGSIPRELQKLQNLAELNLWQNFLSGEIPPEIGNLSSLQSLALHHNSFGGALPKELGKLSNLQRLYIYTNRLNGSIPVELGNCTNAIEIDLSENRLSGNIPKELGQISGLTLLHLFENLLQGDIPQELGNLKLLKNLDLSINNLSGTIPLVFQNLTYMVDLQLFDNHLQGKIPPYLGSNSNLTVLDISMNYLIGMIPPHLCRNQKLQFLSLGSNKLLGNIPHDLKMCKPLVQLMLGDNQLTGSFPLELYELHNLSALELQQNRFSGLIDHGIGRLKNLKRLLLSDNYFLGYLPPEIGNLTQLVSFNISSNFLSGSIPHELGNCIKLQRLDLSRNGFTGDLPDDIGKLVNLELLKLSDNRLSGTIPSALGDLSRLTDLELGGNLFFGSIPFHLGQLAALQIALNLSYNKLSGTIPDSLGSLQMLESLYLNDNQLVGEIPTSIGDLPSLLLCNVSNNKLVGVIPDTPAFRKMNFTNFAGNNGLCRVGSYYCHPSHTPSWSRDGSSKQKIVSIVSAVVGFVSLIFIVFICWAMKRRGSSFVSIEGQSKPHVLDNYYFPKEGFTYQDLLEATSNFSEALVIGRGACGTVYKAVLTDGEVIAVKKLNSRGEGANVDRSFLAEISTLGKIRHRNIVKLFGFCCHEDSNILLYEYMENGSLGEQLHSDPNTCILGWSSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVYQAHVGDFGLAKLVDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTWVRRSIQASVPTSELFDRRLNLSAQKTIDEMSLVLKIALFCTSTSPLNRPTMKEVIAMLIDAREYVNNSPLTPTSESPLDEDASSKGDLEF | 1103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral875g00011 | 1103 | ProSiteProfiles | Protein kinase domain profile. | 798 | 1078 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pral875g00011 | 1103 | Gene3D | Ribonuclease Inhibitor | 234 | 394 | IPR032675 | - | |
| Pral875g00011 | 1103 | Pfam | Leucine rich repeat | 552 | 610 | IPR001611 | GO:0005515 | |
| Pral875g00011 | 1103 | SUPERFAMILY | L domain-like | 31 | 309 | - | - | |
| Pral875g00011 | 1103 | Gene3D | Phosphorylase Kinase; domain 1 | 764 | 875 | - | - | |
| Pral875g00011 | 1103 | Gene3D | Ribonuclease Inhibitor | 84 | 233 | IPR032675 | - | |
| Pral875g00011 | 1103 | Gene3D | Ribonuclease Inhibitor | 25 | 83 | IPR032675 | - | |
| Pral875g00011 | 1103 | FunFam | Leucine-rich repeat receptor-like protein kinase PEPR1 | 28 | 184 | - | - | |
| Pral875g00011 | 1103 | FunFam | Predicted protein | 185 | 280 | - | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 94 | 118 | IPR003591 | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 478 | 501 | IPR003591 | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 166 | 190 | IPR003591 | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 574 | 598 | IPR003591 | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 358 | 381 | IPR003591 | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 286 | 310 | IPR003591 | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 502 | 526 | IPR003591 | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 647 | 671 | IPR003591 | - | |
| Pral875g00011 | 1103 | SMART | LRR_typ_2 | 238 | 262 | IPR003591 | - | |
| Pral875g00011 | 1103 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 | 406 | 720 | - | - | |
| Pral875g00011 | 1103 | SUPERFAMILY | Protein kinase-like (PK-like) | 775 | 1071 | IPR011009 | - | |
| Pral875g00011 | 1103 | Pfam | Leucine rich repeat N-terminal domain | 30 | 69 | IPR013210 | - | |
| Pral875g00011 | 1103 | SMART | LRR_sd22_2 | 286 | 307 | - | - | |
| Pral875g00011 | 1103 | SMART | LRR_sd22_2 | 574 | 600 | - | - | |
| Pral875g00011 | 1103 | SMART | LRR_sd22_2 | 430 | 449 | - | - | |
| Pral875g00011 | 1103 | SMART | LRR_sd22_2 | 166 | 192 | - | - | |
| Pral875g00011 | 1103 | SMART | LRR_sd22_2 | 214 | 243 | - | - | |
| Pral875g00011 | 1103 | SMART | LRR_sd22_2 | 647 | 673 | - | - | |
| Pral875g00011 | 1103 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 281 | 375 | - | - | |
| Pral875g00011 | 1103 | Gene3D | Ribonuclease Inhibitor | 395 | 722 | IPR032675 | - | |
| Pral875g00011 | 1103 | SMART | serkin_6 | 798 | 1078 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pral875g00011 | 1103 | SUPERFAMILY | RNI-like | 365 | 687 | - | - | |
| Pral875g00011 | 1103 | Gene3D | Transferase(Phosphotransferase) domain 1 | 876 | 1087 | - | - | |
| Pral875g00011 | 1103 | MobiDBLite | consensus disorder prediction | 1081 | 1103 | - | - | |
| Pral875g00011 | 1103 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 | 876 | 1088 | - | - | |
| Pral875g00011 | 1103 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 921 | 933 | IPR008271 | GO:0004672|GO:0006468 | |
| Pral875g00011 | 1103 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 732 | 1083 | - | - | |
| Pral875g00011 | 1103 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase | 763 | 875 | - | - | |
| Pral875g00011 | 1103 | Pfam | Protein kinase domain | 803 | 1068 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral875g00011 | Pral-Chr875 | 156168 | 161507 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral875g00011 | 54 | 1075 | Receptor kinase-like Gene Family | AT1G73080 | 39.665 | 0.0 | 645 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Pral875g00011 | Pkinase | 5.6e-46 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral875g00011 | - | - | gmx:100818311 | 1701.8 |