Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral872g00003 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGGTTTGGGAGCTTATCGAGGCGGAGTTTTGAGGTGAGGCTTCCTGGCCATCATAGGAAGTCTCAAAGCTCAGTACACGAGTTGCAGGACCAAGCTCCTGTCATACAGAACAGCCGTTGGGCCAGCCTTCCGCCAGAGCTTCTTCGTGATGTTATCAAAAGATTGGAAACAAGTGAGAGTACCTGGCCTGGCCGTAAACATGTAGTTGCTTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGTAAAGAAATTGTGAGCAGTCCAGAGTTCTCTGGGAAGATTACTTTCCCTATTTCCCTTAAGCAGCCTGGATTCAGGGATGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGACATACCATCTGTTCCTTTGCCTTAGTCCTGCACTGCTTGTTGAAAATGGAAAGTTTCTTTTATCGGCTAAAAGGACAAGAAGAACTACGTGCACAGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAGTACTAGGTACATTGGAAAATTGAGGTCAAACTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTACAATAATTCTCAGCTGTCTCCACCTGGCCGAAGTCGTAGGTTTTATTCAAAAAAGGTTTCCCCAAAAGTCCCTAGTGGCAGCTACAATATTGCTCAGGTCTCTTATGAGCTTAATGTGCTAGGTACTCGTGGACCTCGTCGAATGCACTGTACCATGTACTCAATCCCCACATCATCTCTTGAGCCGGGTGGCATTGTCCCAGGCCAACCTGAGCTTCTTCCCCGCTCCCTTGAGGATTCGTTCAGAAGTATATCCTTCTCAAAATCAATTGACAATTCGACTGAGTTTAGCAGCTCTAGGTTCTCGGACATAATGGGTCCCGGAAACGAGGAGGAGGAAGGCAAGGAGAGACCATTAGTTCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGGAGGGTGACAGTTGCATCTGTAAAAAATTTTCAGCTGATTGCAGCAACTTCACCACCTGCACCGGGTGGCCTGACACCAGCACAGCCATCGCAGCCTTCGCAATCTGATCACGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGACATGTTCACCATGGATTATAGATATCCCCTATCAGCATTTCAGGCTTTTGCCATTTGCCTGACCAGCTTCGACACAAAACTGGCATGTGAATAG 1284 0.4626 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRKSQSSVHELQDQAPVIQNSRWASLPPELLRDVIKRLETSESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFSGKITFPISLKQPGFRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSTRYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFYSKKVSPKVPSGSYNIAQVSYELNVLGTRGPRRMHCTMYSIPTSSLEPGGIVPGQPELLPRSLEDSFRSISFSKSIDNSTEFSSSRFSDIMGPGNEEEEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPPAPGGLTPAQPSQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral872g00003 427 Gene3D Tubby Protein; Chain A 111 427 IPR025659 -
Pral872g00003 427 MobiDBLite consensus disorder prediction 303 322 - -
Pral872g00003 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Pral872g00003 427 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Pral872g00003 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Pral872g00003 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Pral872g00003 427 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Pral872g00003 427 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Pral872g00003 427 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Pral872g00003 427 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Pral872g00003 427 FunFam Tubby-like F-box protein 47 100 - -
Pral872g00003 427 SUPERFAMILY F-box domain 44 96 IPR036047 GO:0005515
Pral872g00003 427 Gene3D - 47 100 - -
Pral872g00003 427 PANTHER TUBBY-RELATED 39 425 - -
Pral872g00003 427 SUPERFAMILY Tubby C-terminal domain-like 101 427 IPR025659 -
Pral872g00003 427 CDD F-box_AtTLP-like 52 96 - -
Pral872g00003 427 FunFam Tubby-like F-box protein 109 427 - -
Pral872g00003 427 Pfam F-box domain 52 99 IPR001810 GO:0005515
Pral872g00003 427 Pfam Tub family 113 422 IPR000007 -
Pral872g00003 427 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral872g00003 Pral-Chr872 59453 63778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral872g00003 1 427 TUB Transcription Factor Family AT1G76900 70.588 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral872g00003 Tub 3.5e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral872g00003 K19600 - qsu:111992792 774.622