Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral871g00082 ATGTCTGCCTTCTTCCAGTCTCTCCTCCGGCGGATTGGTCGACAGCTCCTGGGAAATAATTCTCAAACCAGCGGCGGCGACGCCGTAGACAACAACTTCATCGAGTGCTACGCTTGCACTCAGGTTGGCGTTCCTGTCTTCCACTCCACCAGCTGTGACGGCTATAACCAGCTCCAATGGGAGGCCTCCGCCGGTTCTTCCCTGATCCCCATCCAGAACCGAACAGCCCGCAGCAACCCGACCACCACGCCCAAATCGGGTCCGTTCGGGCGAGTTATCGACCCGCGGAGCAAGCGCGTGCAGTCGTGGAACAGAGCGTTGCTGTTATCGCGTGGGATGGCGCTGGCCATCGACCCATTGTTCTTCTACGCACTGTCTATCGGCAGAGAAGGGAGGCCGTGCCTGTACATGGATGAGAAGTTGGCGGTGATTGTGACGGTGCTTCGCACGTGCGTGGACGCGATGCACGTGTTCCACGTATGGCTGCAGTTGCGGATGGCTTGCGTGTCGAAGGAATCGCTGGTGCTTGGGTGCGGGAAGCTCGTGTGGGATGCACGTGCCATAGCCAAGCATTATCTGGGTTCGTTCAGGCGGTTCTGGTTCGATGCCTTCGTTATCTTCCCCATTCCGCAGGCTGTGTTTTGGTTAGTACTGCCCAAATTAATAAGAGAAGAGCGAATTAAACTCATAGTGACAATACTACTGTTAATCTTCTTGTTCCAGTTTCTCCCCAAGGTCTACCACAGCATCATCTTGATGAGAAGAATGAAAAAAGTTACTGGCTACATCTTTGGCACCATTTGGTGGGGATTTGGCCTCAATCTCATAGCTTACTTAATTGCTTCTCATGTTACTGGAGGGTGCTGGTATGTCCTGGCAATTCAACGTGTTGCTTCATGCCTCCAGAGGCAGTGTGAAAGTAGTCCTGGTTGTAGTCTGCCTCTTTCATGCTCGGAGGAGGTATGCTATCAGCATCTGTTGCGAAAAAGCACGCTAGAAAATCTATGTCATGGAAACTCCACGGTAGTGGTGAGAAAGACTTTGTGCTTAGATTTTGAAGGACCTTTCAAATATGGAATCTACCAGTGGGCTATTCCAGTCATATCCAGCAATTCCTTGGCTGTCAAGATTCTATACCCCATATTTTGGGGTTTGATGGCTCTCAGCACCTTTGGCAACGTTCTTGAACCCACAAGTCACTGGCTAGAAGTAATTTTCAGCATATGCATCGTACTTAGTGGATTACTGCTTTTCACTTTGTTGATTGGGAACATCCAGGTATTCCTACTTGCAGTAATGGCAAAGAAGAGAAAGATGCAGCTGAGACGTCGTGACATGGAGTGGTGGATGAGAAGGAGGCAGCTGCCGTCGCACTTACGACAAAGAGTTCGCCATTTCGAGCGTCACAGATGGGCCGCCATGGGAGGAGAGGACGAAATGGAATTGATAAAGGGCTTGCCAGAAGGCCTGAGGAGGGACATCAAGCGGTTTCTATGCTTAGACCTCATCAAACAGGTACCTCTGTTTCACAACTTGGATGATCTTATTCTTGATAACATCTGTGACAGGGTTAAACCCTTAATCTTCTCTAAAGATGAAAAGATAATCAGAGAAGGAGACCCGGTTACAAGGATGGTGTTCATTGTTCGTGGACGAATAAAACGCATCCAAAGCCTAAGCAAAGGCGTGATAGCCACGAGTAACCTTGAAGGAGGAGGGTTTCTGGGTGATGAGCTGCTGTCATGGTGCCTTCGCCGGCCGTTTATGGACCGGCTTCCGGCGTCCTCAGCAGCATTTGTATGTGTTGAATCAACAGAAGCCTTTGGCCTGAGTGCTGAACACCTTAAGTACATTACTGATCACTTCCGCTACAAATTTGCTAATGAAAGACTCAAGAGAACGGCCAGGTATTACTCATCCAATTGGCGAACCTGGGCTGCTGTTAATATCCAACTTGCTTGGCAAAATTACAGGAAAAGGACTAAAGGTTCAGTGATTTCTGTAACTGCAAGTGAAAATGGTGCCAGTGAACGCAGGCTTCTGCAGTATGCTGCAATGTTTATGTCAATAAGGCCACATGACCACCTTGAATAA 2094 0.4914 MSAFFQSLLRRIGRQLLGNNSQTSGGDAVDNNFIECYACTQVGVPVFHSTSCDGYNQLQWEASAGSSLIPIQNRTARSNPTTTPKSGPFGRVIDPRSKRVQSWNRALLLSRGMALAIDPLFFYALSIGREGRPCLYMDEKLAVIVTVLRTCVDAMHVFHVWLQLRMACVSKESLVLGCGKLVWDARAIAKHYLGSFRRFWFDAFVIFPIPQAVFWLVLPKLIREERIKLIVTILLLIFLFQFLPKVYHSIILMRRMKKVTGYIFGTIWWGFGLNLIAYLIASHVTGGCWYVLAIQRVASCLQRQCESSPGCSLPLSCSEEVCYQHLLRKSTLENLCHGNSTVVVRKTLCLDFEGPFKYGIYQWAIPVISSNSLAVKILYPIFWGLMALSTFGNVLEPTSHWLEVIFSICIVLSGLLLFTLLIGNIQVFLLAVMAKKRKMQLRRRDMEWWMRRRQLPSHLRQRVRHFERHRWAAMGGEDEMELIKGLPEGLRRDIKRFLCLDLIKQVPLFHNLDDLILDNICDRVKPLIFSKDEKIIREGDPVTRMVFIVRGRIKRIQSLSKGVIATSNLEGGGFLGDELLSWCLRRPFMDRLPASSAAFVCVESTEAFGLSAEHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAWQNYRKRTKGSVISVTASENGASERRLLQYAAMFMSIRPHDHLE 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral871g00082 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 84 669 - -
Pral871g00082 697 SMART cnmp_10 508 634 IPR000595 -
Pral871g00082 697 ProSiteProfiles cAMP/cGMP binding motif profile. 508 587 IPR000595 -
Pral871g00082 697 CDD CAP_ED 508 618 IPR000595 -
Pral871g00082 697 SUPERFAMILY cAMP-binding domain-like 435 622 IPR018490 -
Pral871g00082 697 SUPERFAMILY Voltage-gated potassium channels 94 429 - -
Pral871g00082 697 Gene3D Helix hairpin bin 434 499 - -
Pral871g00082 697 Pfam Ion transport protein 102 426 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral871g00082 697 Gene3D Jelly Rolls 506 624 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral871g00082 Pral-Chr871 641247 646746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral871g00082 34 697 Ion Channels AT5G15410 75.111 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral871g00082 K05391 - qsa:O6P43_004432 1092.8