Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral871g00079 ATGTTCAGGGCAGAACGTATGCGAGCAATGTATAGAAATCCTCTCTGGCAGGTCAAATCTGTGCTGGATATGAGACACCATGACCACTATAAGATATATAATCTATGTATAGAAGAGAATTATGATCCAGCACACTTTTATGGTCGTGTGGAAGCATATCCCTTTGATGACAACCATGTACCACCTCTTGAAATGATCAAGAACTTCTGTGAAAGTGTGCATTCGTGGTTATCCAGTGACCCAAAAAATATTGCTGTCATCCATTGCATGGCAGGGAAGGGTAGAACTGGCTTGATGGTATCTTCATACCTAGTTTACTGCGGTATGTCCACAGATGAGGCTCTTCAATTGTATGCTGATAGACGGACAACCAATAACGAAGGAGTGTCAATACCAAGCCAATGTCGTTATGTAGGGTACTGGGAAAGTATACTATCTGTTCCTAGAGGCATTCGTAATGAACCAGTAACTGTGAGCTTGCCTCAACCATGTAGCAGAGAATTGCGGCGAATCCGGCTTTATGATACACTTAATGTTGAAGCGATCTTCTTTGTGATCTTAGAGATGCAGAAGGTTCCTAATCAAGTCTACTGTCCATCAGTGGAGATTATTCGGAGCAGCTGCAGACGAATTAAGAAAGGATATCAGCAAAACTACAGTCCTTGCTATTATCTCTCTTATGTAGAAGGTGATGAAGATGGAAAAGAATCAAAATTAGAGGAAGCTCGTGTTGTAGTCCAAATGGACACTGAGGATCCGGCAATATACCAAAAATCTTGTCTGGACCATTACTTTGACAAACCAGTCCAACTTACTGGAGATGTTCGTGTCATATTCTATCAAAAAATGATGGGAAGCCGACTTTTCTACTGCTGTTTTAATACAGCTTTTATTAGGAATGGCTTGCTACAGCTGAGGATGAAGGACTTGGACAAAGTAGGGAATAAAGGAAGATCAATCTGTGGGCCATGCTTCTGCTTAGAATTTCTGTTTGGCCCAGCCAACATGAAACACTCGGCAACTCCATCTAATGAGGATTCTGAGGATGAATATCCTTAA 1059 0.4145 MFRAERMRAMYRNPLWQVKSVLDMRHHDHYKIYNLCIEENYDPAHFYGRVEAYPFDDNHVPPLEMIKNFCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVSSYLVYCGMSTDEALQLYADRRTTNNEGVSIPSQCRYVGYWESILSVPRGIRNEPVTVSLPQPCSRELRRIRLYDTLNVEAIFFVILEMQKVPNQVYCPSVEIIRSSCRRIKKGYQQNYSPCYYLSYVEGDEDGKESKLEEARVVVQMDTEDPAIYQKSCLDHYFDKPVQLTGDVRVIFYQKMMGSRLFYCCFNTAFIRNGLLQLRMKDLDKVGNKGRSICGPCFCLEFLFGPANMKHSATPSNEDSEDEYP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral871g00079 352 ProSiteProfiles C2 tensin-type domain profile. 179 334 IPR014020 -
Pral871g00079 352 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 67 122 IPR000387 GO:0016311|GO:0016791
Pral871g00079 352 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 7 145 IPR029021 -
Pral871g00079 352 Gene3D Protein tyrosine phosphatase superfamily 1 159 IPR029021 -
Pral871g00079 352 Gene3D - 201 336 - -
Pral871g00079 352 Pfam C2 domain of PTEN tumour-suppressor protein 250 331 IPR014020 -
Pral871g00079 352 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 2 348 - -
Pral871g00079 352 ProSiteProfiles Phosphatase tensin-type domain profile. 1 148 IPR029023 -
Pral871g00079 352 Pfam Tyrosine phosphatase family 81 119 IPR026893 GO:0004721
Pral871g00079 352 ProSitePatterns Tyrosine specific protein phosphatases active site. 87 97 IPR016130 GO:0016311|GO:0016791
Pral871g00079 352 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 333 IPR035892 -
Pral871g00079 352 SMART PTEN_C2_2 161 333 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral871g00079 Pral-Chr871 634413 639521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral871g00079 2 346 Protein tyrosine phosphatase (PTP) family AT5G39400 66.571 2.16e-169 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral871g00079 K01110 - qsa:O6P43_004433 573.163