Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral871g00062 ATGGGAAACACCGAGCAACTGAACTTTTCTGAATTCTTGTCCGAGCTAATAGGTTTGGCTGATGAGGTTGCTTCGACTGCTCAGAACTGTGAAATTGAAAAGAATGCTTTTGCCGAGTTCGCCATATTAGTGGAGGAATTTGGATCGCTCTTCAGTAATTTGAGAGACAAAAGCATGGTCATGGACAAGCCACCTATTAGGAAATCGTTGGAATCTCTTAAGAATGAGCTTAAGCGTGCTAAGGCTTTGACAAAAAGCCTCAGTCAGAAACATCTTATTAAACAGATTGAGGACATAACTCATGATCTCGGTCGATCATTGGGACTGCTGCTTGTGTCCAGCCTTGAAGTGTCCACTGATTCTAGAGAAAAGATTATTGCATTGCAGAGAAAGTTGATGGGTGCCCGATTTGGTGGAAATACAAGTTCAACTTCAAGTCCAAGATCGGAGTTTGTCAGTGATGTGAAGCTTGAAGAGGAAATAGAAGAAGAAATAAATTACTTCACTATTGATGATGTTATACTGCAACTTAAACATGGTAATGATGAAGAATTCAAAGTTGCACTTTTGAGACTAAAGGAGTTCATCAGAGATGAAAAAGCAGATTATGATTTAATTAACGAGGAAGTACTTGTTGCCATTCTAATGAATCGACTAGGTTCAAGCAAGGCTGACAATAGGCTGACCATCCTTCAATTACTGAGAAGCATTGCTTTTGGCAATGATGAAAAGAAGGAGAAGATGGCAGACATTGAGTTTTTATCAACTTTGGTGAAGTCTCTATCAAGGGAAGCAGAAGAAAGGAGAGAGGCAGTGGGGCTTCTACTAGACCTCTCTAGCCTTCCTTCAGTTAAGCGGCGAATAGGAAGAATTCAAGGGTGTATTGTTATGCTGGTCTCTATTCTTAATGGAGATGATCCTGTTGCTTCACATGATTCAGCAAAGTTGTTGAATGCGTTGTCTGGGTCTGACATGACCAAGATCCTCATGGCAACAGCACTGTCGAGATTGGAGCTCACTGATCACAGCAAATTCACACTTGGAGAAGATGGGGTGATTGAGCCTTTAGTCAAGATGTTTACTTCTGGGAAGCTTGAGTCCAAGTTATCATCTCTAAATGCACTGCAAAATTTGTCGAGCTTGGCAGAAAATGCACAACGTTTGATCAGATCAGGAATTGTCGCGCCTCTGCTTCAACTTCTTTTCTCTGTAACGTCTGTACTCATGACTCTCCGGGAGCCTGTATCAGCTATTCTTGCAAGAGTTGCACAGTCAGAGCCCTTGCTTATTAATCCAGAAGCGGTTCAGCAGATGCTCTCACTATTGAATCTTTCCAGCCCAATAATTCAGTGTCATCTTTTAGAGGCACTAGATAGCATTGCTGCTCATCCGGGTGCCTCAAAAGTGAGGAAAAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTTTTACCTTTCCTGATGGAAACCAACACTAAAATCCAAAGCAAGGCCTTGCAATTGCTGTACACTCTTTCCAAAGATCTAACGGAAGAGTTGACAGAACATCTTGATGATACGCATCTTTTTAAAATTGTTAATATTATCTCATCATCAACGTCTGACAGTGAAAAAGCTGTTGCTGTTGGTTTACTGAGTAATCTTCCCGTTAGTAATAAGAAAGTGACAGATGTACTGAAGAGGGCAAATTTGCTCCCTATTTTAACATCCATTATGTCTTCAAGCGCAGGAAGTAATTCACCCACAACATGTTGCCTGATGCAGAATGTTGTGGGTGTTATAATCCGGTTTACAAATCCTTCTGATAAGAAACTACAACTTCTCTCAGCAGAACACGGGGTAATTCCTTTGCTCATAAAACTGCTCTCAACTGGCTCACCAATCACAAAATCCAGGGCTGCAACGTCACTTGCTCAATTATCTCAGAATTCTGTGTCTCTTAGGAGGGCTAGAAAATCAAGATGGTTTTGTGTTCCTCCTTCAGCAGATGTCCATTGTGAAGTTCATGACAGTAACTGCTTTGTGAAGAGCACATTTTGTTTAGTCAAAGCCGGTGCTGTTCCTCCGCTTATCCAAATATTAGAAGATAAGGAGAAGGAAGCTGTTGAAGCTGCTTTAATTGCCCTCTCAACTCTATTACAAGATGAAATATGGGAAGGTGGTGTCAACTGCATAGCTAAATCCTCAGGTGTTCAGGCTATCATAAAGATTTTAGAAGTGGGGGATGTAAAGGCCCAAGAGAAAGCACTTTGGATGTTGGAGAGAATATTCAGGGTTGAAGAACATAGAGTTACGTTTGGAGAATCTGCTCAGGTTGTTCTTATTGATCTTGCGCAGAAGAGTGATTCCAGATTGAAGTCAGCAGTCGCAAAATTATTAGCTGAGCTCGAGCTCTTGCAAAATCAATCAAATTACTTCTGA 2418 0.4115 MGNTEQLNFSEFLSELIGLADEVASTAQNCEIEKNAFAEFAILVEEFGSLFSNLRDKSMVMDKPPIRKSLESLKNELKRAKALTKSLSQKHLIKQIEDITHDLGRSLGLLLVSSLEVSTDSREKIIALQRKLMGARFGGNTSSTSSPRSEFVSDVKLEEEIEEEINYFTIDDVILQLKHGNDEEFKVALLRLKEFIRDEKADYDLINEEVLVAILMNRLGSSKADNRLTILQLLRSIAFGNDEKKEKMADIEFLSTLVKSLSREAEERREAVGLLLDLSSLPSVKRRIGRIQGCIVMLVSILNGDDPVASHDSAKLLNALSGSDMTKILMATALSRLELTDHSKFTLGEDGVIEPLVKMFTSGKLESKLSSLNALQNLSSLAENAQRLIRSGIVAPLLQLLFSVTSVLMTLREPVSAILARVAQSEPLLINPEAVQQMLSLLNLSSPIIQCHLLEALDSIAAHPGASKVRKKMKEKGALQLLLPFLMETNTKIQSKALQLLYTLSKDLTEELTEHLDDTHLFKIVNIISSSTSDSEKAVAVGLLSNLPVSNKKVTDVLKRANLLPILTSIMSSSAGSNSPTTCCLMQNVVGVIIRFTNPSDKKLQLLSAEHGVIPLLIKLLSTGSPITKSRAATSLAQLSQNSVSLRRARKSRWFCVPPSADVHCEVHDSNCFVKSTFCLVKAGAVPPLIQILEDKEKEAVEAALIALSTLLQDEIWEGGVNCIAKSSGVQAIIKILEVGDVKAQEKALWMLERIFRVEEHRVTFGESAQVVLIDLAQKSDSRLKSAVAKLLAELELLQNQSNYF 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral871g00062 805 Gene3D - 170 326 IPR011989 -
Pral871g00062 805 SMART arm_5 673 713 IPR000225 GO:0005515
Pral871g00062 805 SMART arm_5 717 757 IPR000225 GO:0005515
Pral871g00062 805 SMART arm_5 601 641 IPR000225 GO:0005515
Pral871g00062 805 SMART arm_5 381 424 IPR000225 GO:0005515
Pral871g00062 805 SMART arm_5 466 506 IPR000225 GO:0005515
Pral871g00062 805 SMART arm_5 241 280 IPR000225 GO:0005515
Pral871g00062 805 SMART arm_5 340 380 IPR000225 GO:0005515
Pral871g00062 805 Gene3D - 327 653 IPR011989 -
Pral871g00062 805 Gene3D - 668 803 IPR011989 -
Pral871g00062 805 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 351 393 IPR000225 GO:0005515
Pral871g00062 805 Coils Coil 781 801 - -
Pral871g00062 805 Gene3D - 9 101 IPR036537 GO:0007166
Pral871g00062 805 Coils Coil 70 90 - -
Pral871g00062 805 SUPERFAMILY ARM repeat 169 329 IPR016024 -
Pral871g00062 805 SUPERFAMILY ARM repeat 320 760 IPR016024 -
Pral871g00062 805 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral871g00062 Pral-Chr871 484740 488810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral871g00062 188 805 U-box Gene Family AT1G20780 28.951 1.29e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral871g00062 K08332 - gmx:100791453 1070.07