Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral871g00061 ATGGGAAACACCGAGCAACTGAACTTTTCTGAATTCTTGTCCGAGCTAATAGGTTTGGCTGATGAGGTTGCTTCGACTGCTCAGAACTGTGAAATTGAAAAGAATGCTTTTGCCGAGTTCGCCATATTAGTGGAGGAATTTGGATCGCTCTTCAGTAATTTGAGAGACAAAAGCATGGTCATGGACAAGCCACCTATTAGGAAATCGTTGGAATCTCTTAAGAATGAGCTTAAGCGTGCTAAGGCTTTGACAAAAAGCCTCAGTCAGAAACATCTTATTAAACAGATTGAGGACATAACTCATGATCTCGGTCGATCATTGGGACTGCTGCTTGTGTCCAGCCTTGAAGTGTCCACTGATTCTAGAGAAAAGATTATTGCATTGCAGAGAAAGTTGATGGGTGCCCGATTTGGTGGAAATACAAGTTCAACTTCAAGTCCAAGATCGGAGTTTGTCAGTGATGTGAAGCTTGAAGAGGAAATAGAAGAAGAAATAAATTACTTCACTATTGATGATGTTATACTGCAACTTAAACATGGTAATGATGAAGAATTCAAAGTTGCACTTTTGAGACTAAAGGAGTTCATCAGAGATGAAAAAGCAGATTATGATTTAATTAACGAGGAAGTACTTGTTGCCATTCTAATGAATCGACTAGGTTCAAGCAAGGCTGACAATAGGCTGACCATCCTTCAATTACTGAGAAGCATTGCTTTTGGCAATGATGAAAAGAAGGAGAAGATGGCAGACATTGAGTTTTTATCAACTTTGGTGAAGTCTCTATCAAGGGAAGCAGAAGAAAGGAGAGAGGCAGTGGGGCTTCTACTAGACCTCTCTAGCCTTCCTTCAGTTAAGCGGCGAATAGGAAGAATTCAAGGGTGTATTGTTATGCTGGTCTCTATTCTTAATGGAGATGATCCTGTTGCTTCACATGATTCAGCAAAGTTGTTGAATGCGTTGTCTGGTAATTCTCAAAATGCTCTTCATATGGCAGAGGCCGGTTATTTTAAGCCACTAGTGCAATGTTTGAAGGAAGGGTCTGACATGACCAAGATCCTCATGGCAACAGCACTGTCGAGATTGGAGCTCACTGATCACAGCAAATTCACACTTGGAGAAGATGGGGTGATTGAGCCTTTAGTCAAGATGTTTACTTCTGGGAAGCTTGAGTCCAAGTTATCATCTCTAAATGCACTGCAAAATTTGTCGAGCTTGGCAGAAAATGCACAACGTTTGATCAGATCAGGAATTGTCGCGCCTCTGCTTCAACTTCTTTTCTCTGTAACGTCTGTACTCATGACTCTCCGGGAGCCTGTATCAGCTATTCTTGCAAGAGTTGCACAGTCAGAGCCCTTGCTTATTAATCCAGAAGCGGTTCAGCAGATGCTCTCACTATTGAATCTTTCCAGCCCAATAATTCAGTGTCATCTTTTAGAGGCACTAGATAGCATTGCTGCTCATCCGGGTGCCTCAAAAGTGAGGAAAAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTTTTACCTTTCCTGATGGAAACCAACACTAAAATCCAAAGCAAGGCCTTGCAATTGCTGTACACTCTTTCCAAAGATCTAACGGAAGAGTTGACAGAACATCTTGATGATACGCATCTTTTTAAAATTGTTAATATTATCTCATCATCAACGTCTGACAGTGAAAAAGCTGTTGCTGTTGGTTTACTGAGTAATCTTCCCGTTAGTAATAAGAAAGTGACAGATGTACTGAAGAGGGCAAATTTGCTCCCTATTTTAACATCCATTATGTCTTCAAGCGCAGGAAGTAATTCACCCACAACATGTTGCCTGATGCAGAATGTTGTGGGTGTTATAATCCGGTTTACAAATCCTTCTGATAAGAAACTACAACTTCTCTCAGCAGAACACGGGGTAATTCCTTTGCTCATAAAACTGCTCTCAACTGGCTCACCAATCACAAAATCCAGGGCTGCAACGTCACTTGCTCAATTATCTCAGAATTCTGTGTCTCTTAGGAGGGCTAGAAAATCAAGATGGTTTTGTGTTCCTCCTTCAGCAGATGTCCATTGTGAAGTTCATGACAGTAACTGCTTTGTGAAGAGCACATTTTGTTTAGTCAAAGCCGGTGCTGTTCCTCCGCTTATCCAAATATTAGAAGATAAGGAGAAGGAAGCTGTTGAAGCTGCTTTAATTGCCCTCTCAACTCTATTACAAGATGAAATATGGGAAGGTGGTGTCAACTGCATAGCTAAATCCTCAGGTGTTCAGGCTATCATAAAGATTTTAGAAGTGGGGGATGTAAAGGCCCAAGAGAAAGCACTTTGGATGTTGGAGAGAATATTCAGGGTTGAAGAACATAGAGTTACGTTTGGAGAATCTGCTCAGGTTGTTCTTATTGATCTTGCGCAGAAGAGTGATTCCAGATTGAAGTCAGCAGTCGCAAAATTATTAGCTGAGCTCGAGCTCTTGCAAAATCAATCAAATTACTTCTGA 2490 0.4112 MGNTEQLNFSEFLSELIGLADEVASTAQNCEIEKNAFAEFAILVEEFGSLFSNLRDKSMVMDKPPIRKSLESLKNELKRAKALTKSLSQKHLIKQIEDITHDLGRSLGLLLVSSLEVSTDSREKIIALQRKLMGARFGGNTSSTSSPRSEFVSDVKLEEEIEEEINYFTIDDVILQLKHGNDEEFKVALLRLKEFIRDEKADYDLINEEVLVAILMNRLGSSKADNRLTILQLLRSIAFGNDEKKEKMADIEFLSTLVKSLSREAEERREAVGLLLDLSSLPSVKRRIGRIQGCIVMLVSILNGDDPVASHDSAKLLNALSGNSQNALHMAEAGYFKPLVQCLKEGSDMTKILMATALSRLELTDHSKFTLGEDGVIEPLVKMFTSGKLESKLSSLNALQNLSSLAENAQRLIRSGIVAPLLQLLFSVTSVLMTLREPVSAILARVAQSEPLLINPEAVQQMLSLLNLSSPIIQCHLLEALDSIAAHPGASKVRKKMKEKGALQLLLPFLMETNTKIQSKALQLLYTLSKDLTEELTEHLDDTHLFKIVNIISSSTSDSEKAVAVGLLSNLPVSNKKVTDVLKRANLLPILTSIMSSSAGSNSPTTCCLMQNVVGVIIRFTNPSDKKLQLLSAEHGVIPLLIKLLSTGSPITKSRAATSLAQLSQNSVSLRRARKSRWFCVPPSADVHCEVHDSNCFVKSTFCLVKAGAVPPLIQILEDKEKEAVEAALIALSTLLQDEIWEGGVNCIAKSSGVQAIIKILEVGDVKAQEKALWMLERIFRVEEHRVTFGESAQVVLIDLAQKSDSRLKSAVAKLLAELELLQNQSNYF 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral871g00061 829 Coils Coil 805 825 - -
Pral871g00061 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Pral871g00061 829 Gene3D - 367 677 IPR011989 -
Pral871g00061 829 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 169 829 - -
Pral871g00061 829 Coils Coil 70 90 - -
Pral871g00061 829 Gene3D - 9 101 IPR036537 GO:0007166
Pral871g00061 829 SUPERFAMILY ARM repeat 372 784 IPR016024 -
Pral871g00061 829 SUPERFAMILY ARM repeat 169 425 IPR016024 -
Pral871g00061 829 Gene3D - 692 827 IPR011989 -
Pral871g00061 829 SMART arm_5 490 530 IPR000225 GO:0005515
Pral871g00061 829 SMART arm_5 323 363 IPR000225 GO:0005515
Pral871g00061 829 SMART arm_5 697 737 IPR000225 GO:0005515
Pral871g00061 829 SMART arm_5 405 448 IPR000225 GO:0005515
Pral871g00061 829 SMART arm_5 741 781 IPR000225 GO:0005515
Pral871g00061 829 SMART arm_5 364 404 IPR000225 GO:0005515
Pral871g00061 829 SMART arm_5 625 665 IPR000225 GO:0005515
Pral871g00061 829 SMART arm_5 241 280 IPR000225 GO:0005515
Pral871g00061 829 Gene3D - 169 366 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral871g00061 Pral-Chr871 484740 488810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral871g00061 188 829 U-box Gene Family AT1G20780 29.690 6.49e-53 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral871g00061 K08332 - gmx:100791453 1124