Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral871g00050 ATGGAGATTCCCTCAGGAGTAAGAATTCCCTCAGGAGTAAGAAAAGGCACGTGGTCTAAAGAAGAAGATGATCTTCTAAGAGCATGCATCCAGCGTTACGGTGAAGGAAAATGGCGCCTAGTTCCTCAAAGAGCAGGCTTGAATAGATGCCGGAAAAGTTGTAGACTGAGGTGGATAAACTACTTAAAGCCAGACATCAAGAGAGGAAACTTCACTGAGGATGAAGCTGATATGATAATGAGGTTCCATAGACTCTTGGGAAACAGATGGTCGCTGATTGCTGCGAGGTTTCCTGGAAGAACATCAAATGACGTGAAGAATTACTGGAACACCCACATACGAAAGAAGCTGCGACGGTCTGAGGAGAAACAAGAGACGACCAGCATGATGAAAAGCCACAAAGTGATAAGGCCCCGACCTCTGACTTTGTCCAGAAACTGGTCAAGGCCGAGTAGAGAGGGATTATCTGAAGAAGGAGCTGCGAATACTTGTGATAATAATGATACTCATAAAAGTGAACAAAGTAGTTGGAGATCAGACAAGGCTATAATGGCGAGTGATGACAGTGACAGTAAGAATAGGAAGAGTGAGAGTAGTGAAGTGGCGGGGGTAGGTAGGGATTCTTCATCAGAGAATAAGGAGTGGTGGGAAAGTTTGTTGCTTGATGACGACGTCATGAACAAAGGCAACGAAGAAGACAGCTTTTGGTGTTTGGGCGCAGAGGAATTCGCAAATTTCTGGCTCAATTCTGGGACGACGACCAACCACCAACCGCTTGATTTCTTTTCAATATGA 795 0.4503 MEIPSGVRIPSGVRKGTWSKEEDDLLRACIQRYGEGKWRLVPQRAGLNRCRKSCRLRWINYLKPDIKRGNFTEDEADMIMRFHRLLGNRWSLIAARFPGRTSNDVKNYWNTHIRKKLRRSEEKQETTSMMKSHKVIRPRPLTLSRNWSRPSREGLSEEGAANTCDNNDTHKSEQSSWRSDKAIMASDDSDSKNRKSESSEVAGVGRDSSSENKEWWESLLLDDDVMNKGNEEDSFWCLGAEEFANFWLNSGTTTNHQPLDFFSI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral871g00050 264 Gene3D - 70 138 - -
Pral871g00050 264 MobiDBLite consensus disorder prediction 117 209 - -
Pral871g00050 264 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pral871g00050 264 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pral871g00050 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 62 IPR017930 -
Pral871g00050 264 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pral871g00050 264 MobiDBLite consensus disorder prediction 171 201 - -
Pral871g00050 264 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pral871g00050 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pral871g00050 264 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 218 - -
Pral871g00050 264 SMART sant 67 115 IPR001005 -
Pral871g00050 264 SMART sant 14 64 IPR001005 -
Pral871g00050 264 CDD SANT 70 113 IPR001005 -
Pral871g00050 264 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral871g00050 264 Gene3D - 15 67 - -
Pral871g00050 264 MobiDBLite consensus disorder prediction 117 132 - -
Pral871g00050 264 CDD SANT 17 62 IPR001005 -
Pral871g00050 264 FunFam Myb transcription factor 15 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral871g00050 Pral-Chr871 408874 410046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral871g00050 10 247 MYB Transcription Factor Family AT1G66370 41.803 2.74e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral871g00050 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral871g00050 - K09422 pcin:129304058 221.476