Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral871g00048 ATGGGTCGATCACCATGCTGTGACAAGGTGGGCTTAAAGAAAGGACCGTGGACTCCCGAGGAAGATCAGAAACTCCTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGAGCCTTGCCAGCAAAAGCTGGCCTCCAGAGGTGTGGCAAGAGCTGCAGACTGAGGTGGACCAATTATCTTAGGCCTGATATTAAAAGAGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATCCAACTCCATGCTCTACTAGGAAACAGGTGGTCGGCTATAGCCACGCACTTGCCAAAGAGAACAGATAATGAAATCAAGAACTACTGGAATACGCATCTGAAGAAAAGATTAATTCAAATGGGAATTGACCCAGTGACCCACAAACCCAGGAATGAGGCCCTTGTGTCTCGCGACTGTAGCCAATCCAAGACTGCAGCCAACCTTAGCCACATGGCTCAATGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGGTTGGCCGGAGAATCCAAACTACGTTCATCACTATCATTTACACCTTCATCTTCTGCTTCTGCCTCAACCTCAGCTCACCCAGTTCTCAAGCCCTGGAATAATGTCGGGTGGCTAAAATTCACTGATCAAAGCATTAACGGTGGTGGTGACCTTGAATCTCCAAAGTCTACTCTAACTCTCTCTGAGAACGCCCCACCTATTATGCCTATGATTGAGTTTGTGGGAACTTCTGGTTCTTGTGAGGCAGCAGGAATGGTGAAAGAAGAAGGTGATCAGCGAGAGTGGAACCACAGTAATGGCTTAGAGAATTCAATGTCTTATGCGTCTAGCCTGCATCATGAGTTGACAATTTCCAACACGGAAGGCACATGGACCTCTCAAGAGCCTCTTCTCAGGATCGGTACTAGTGGGGATGTTGTTGCTGAGGATCAGGGATTCACCAATCGGCTGCTTAACACAAACTCTGACGATCGGAGCTTGTCAGATGAGGGCGGAGGAGAGTCTAACAATTGGGATGATAGTGACGGTGGTGCTGGCAGTGGCATCTTGTGTGAAGATATAAGAACTACTGGAACAGCATTCTTAATTTAG 1080 0.475 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIQMGIDPVTHKPRNEALVSRDCSQSKTAANLSHMAQWESARLEAEARLAGESKLRSSLSFTPSSSASASTSAHPVLKPWNNVGWLKFTDQSINGGGDLESPKSTLTLSENAPPIMPMIEFVGTSGSCEAAGMVKEEGDQREWNHSNGLENSMSYASSLHHELTISNTEGTWTSQEPLLRIGTSGDVVAEDQGFTNRLLNTNSDDRSLSDEGGGESNNWDDSDGGAGSGILCEDIRTTGTAFLI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral871g00048 359 Gene3D - 69 116 - -
Pral871g00048 359 CDD SANT 69 112 IPR001005 -
Pral871g00048 359 Gene3D - 13 66 - -
Pral871g00048 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral871g00048 359 CDD SANT 16 61 IPR001005 -
Pral871g00048 359 FunFam MYB-related transcription factor 13 66 - -
Pral871g00048 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral871g00048 359 SMART sant 66 114 IPR001005 -
Pral871g00048 359 SMART sant 13 63 IPR001005 -
Pral871g00048 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral871g00048 359 FunFam MYB transcription factor 69 116 - -
Pral871g00048 359 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral871g00048 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral871g00048 359 MobiDBLite consensus disorder prediction 309 345 - -
Pral871g00048 359 MobiDBLite consensus disorder prediction 309 330 - -
Pral871g00048 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Pral871g00048 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral871g00048 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral871g00048 Pral-Chr871 385026 388080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral871g00048 1 233 MYB Transcription Factor Family AT3G01140 73.191 6.87e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral871g00048 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral871g00048 K09422 - gmx:100101835 424.091