Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral871g00041 ATGGGTCTTCTTCCTTTTGGCTTTCTTCTTCTGGGATTTGTCTCCTTTGTTCATGGACATGGCTACGGGGGCTGGAATAATGCTCATGCAACTTTCTATGGCGGTAGCGATGCTTCAGGAACTATGGGAGGGGCATGTGGGTACGGAAATCTGTACAGTCAAGGATATGGAACAAACACAGCAGCTGTGAGCAGTGCTTTGTTTGACAATGGACTAAGCTGTGGTGCATGTTATCAGATTAGATGTGTGAATGACCCACAATGGTGTCTCCCCGGCACTGTTGTGGTCACTGCCACTAATTTTTGCCCACCAGGTGGCTGGTGTGACCCTCCCAACCTCCATTTTGATCTTTCCCAACCTGTTTTCCAACACATTGCTCAGTACAAAGCCGGCATTGTTCCTGTCAGTTACAGAAGGGTGAGGTGTAGGAGAAGAGGAGGAATAAGATTTACCATCAATGGGCATTCATACTTCAATTTAGTGCTGGTTACAAACGTTGGAGGAGCTGGAGATGTGCATGCAGTGGCAATCAAGGGGTCAAGGATTAGATGGCAAGCCATGTCCAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCACTGATTTGCACGTCGATTGA 624 0.476 MGLLPFGFLLLGFVSFVHGHGYGGWNNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAAVSSALFDNGLSCGACYQIRCVNDPQWCLPGTVVVTATNFCPPGGWCDPPNLHFDLSQPVFQHIAQYKAGIVPVSYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRIRWQAMSRNWGQNWQSNSYLTDLHVD 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral871g00041 207 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 207 IPR007117 -
Pral871g00041 207 SMART dpbb_1 60 137 IPR007112 -
Pral871g00041 207 Gene3D - 16 142 IPR036908 -
Pral871g00041 207 PRINTS Expansin signature 193 207 IPR002963 GO:0009664
Pral871g00041 207 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Pral871g00041 207 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Pral871g00041 207 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Pral871g00041 207 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Pral871g00041 207 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Pral871g00041 207 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Pral871g00041 207 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Pral871g00041 207 FunFam Expansin 15 143 - -
Pral871g00041 207 Pfam Lytic transglycolase 60 137 IPR009009 -
Pral871g00041 207 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Pral871g00041 207 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Pral871g00041 207 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Pral871g00041 207 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Pral871g00041 207 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Pral871g00041 207 PANTHER EXPANSIN-A15 20 202 IPR002963 GO:0009664
Pral871g00041 207 Pfam Expansin C-terminal domain 148 201 IPR007117 -
Pral871g00041 207 CDD DPBB_EXPA_N 24 137 - -
Pral871g00041 207 Gene3D - 143 204 IPR036749 -
Pral871g00041 207 SUPERFAMILY Barwin-like endoglucanases 12 165 IPR036908 -
Pral871g00041 207 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral871g00041 Pral-Chr871 334541 336294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral871g00041 1 207 Expansin Gene Family AT1G69530 72.811 8.99e-113 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral871g00041 K20628 - qsa:O6P43_004469 367.466