Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral871g00007 ATGAAGATGCAGCAAGACGGTACTGGAGCTGGGGCTGCCTCAGCCGCTGCTCCACCTAACCCTTGCGAAGGAGCAGAGAAGAAGAGCATAAATCCAGAGCTTTGGCAAGCTTGTGCGGGGCCGCTGGTGAACCTGCCGCCAGCTGGTACTCACGTGGTGTACTTCCCTCAAGGTCATAGTGAACAGGTTGCAGCATCTTTAAAGAAGGATGTGGATGGTCAGATCCCAAACTATCCAAATCTCCCTTCTAAGTTACTCTGTCTCCTTCACAATGTTACCATGCATGCTGACCCAGAAACTGATGAAGTATATGCTCAGATGACGCTTCAACCAGTGCCTTCCTTTGACAAGGATGCGTTGTTAAGATCTGATTTTGCTCTCAAGTCAAGTAAACCACAGCCTGAGTTCTTCTGTAAACAATTGACAGCGAGTGATACGAGTACACATGGAGGTTTTTCTGTCCCACGCCGTGCAGCAGAGAAGATTTTCCCTGCTCTTGATTACTCCATGCAACCACCTGCTCAAGAACTTGTGGCAAGAGATTTGCATGACAATGTTTGGACGTTTCGCCATATATATCGTGGACAACCAAAGCGTCACTTACTTACAACTGGATGGAGTCTATTCGTCAGTGGAAAGAGGCTATTTGCTGGAGACTCTGTTTTGTTTATAAGGGATGAAAAGCAGCAGCTTCTTCTGGGTATCAGGCGAGCTAACAGACAACCGACCAATATATCATCTTCGGTGCTATCAAGTGATAGTATGCATATTGGAATTCTGGCAGCTGCAGCTCATGCGGCTGCAAACAACAGTCCCTTCACTGTGTTTTATAACCCTAGGGCTAGCCCATCAGAATTTGTTATTCCTTTAGCAAAGTACTACAAGGCAGTGTATAGCCATCAGATATCACCTGGCATGCGCTTCCGGATGATGTTTGAAACTGAAGATTCAGGAACAAGAAGGTATATGGGTACAATTACTGGGATCTGTGATCTGGATCCTGTTAGATGGAAAAACTCACAATGGCGCAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGGAGAAAGACGAAGTAGGGTTTCAATCTGGGAAATTGAACCAGTGACAGCTCCATTTTTCATCTGCCCACCTCCATTCTTCAGGTCTAAGCGACCAAGAGAACCAGGAATGGCTGATGAAGATCCTTCTGATTTTGATAACCTTTTTAAGCGGACGATGCCTTGGCTTGGTGATGATGCATGCATGAAAGATCCTCAAGCGCTCTCTGGCCTTAGCTTAGTTCAGTGGATGAACATGCAGCAAAATCCTGCACTGTCTAGCTCATTGCAGCCAAGTTACATGCAATCTTTTTCTGGATCTGTTCTGCAGAATCTTCCTGGTGCAGACATTGCCCGTCAGCTGGGATTTTGTTCTCCACAGATTTCTCAGTCAAGCAATGTAACTTTCAATCCTCAGAGGTTACTTCAGACCCCACAACACGTTGACCATCTTCAAAAGATAACATCTGCGTCTAGCCCATTAGGAACGGTCGTGCAGCCACCACAACAATTGGGTGATATCACTCAGCAATCGAGACAGAATGTAGGAAATCAAGCTCTGCCACAAAGTCAAATTCAGAGCCAACTTCTGCATGCTCAAAATATTGTTCAGCCTAACAATGTTCTTCAACAGCAGCAACCTTCCATCCAAAACCATCAACTGCACAGAAATCTCTCTCAGAACCTGTCACAGCCGCAGCAGCAGCAGACAGTTATGGGTCAGAATCAACAGCAAAATCTTATTCAGTCCTCAATGCCTGATCATGTCAGTCAACAGTTGCAGGTGTCTGATAATCAGATTCAGCTTCAATTATTACAGAAGCTTCAACAGCAACAGCAGACACTCTTGGCACAGCAGTCAGTAGTGCCACAGTCTACTCAACTTAGTCAAATCCAAGACCAGCAGAGGCAGCTTTTAGATCCAACTCACGGCTTCTCGAGGGCCTTAACTTCAACTCAAGTTCTAGAAATTCCTCCAATACTTCAAAACTCACTTCCTGATTCTAATTCTATTCCACATCAAATGACGAAGAATAACGGCCAGACCAATAATGTTCAGTTCTCTCATCCAACCCAGCAGGCAAAGCTTCAACAACAGCAACCTGGCACACTGTCTGACATGTCTGGGCATGTGGGCCTTCCTCCTGCTCCTACTGCCAACAAACTCTCTGCAGCTGGCAGTAGTATATTAACTGGAGCAGCTGGAGCAGGGCAGTCTGTAATTACTGATGACATTCCATCTTGTTCCACTTCACCTTCCACTAATAACTGTGCCAATACTATTCCCCATATGAATTCCCGGATCCATAGGAACACAACTATTGGGGATGATATGGCTCAGTCTGCAGCCACGATCTTAAGTCCAGGTGCCTTTGAGACCATGTCATCAAATGCAAGCTTGATGAAAGATTTTCAGCTAAAGTCTGAAGTTAAGCCATCTTTAAATATATCCAAAAGTCAAAATCAAGGGAGTTTGTCCGCCCATGTATACTTAAATGGTGGAGCCGCACAGACAGATTATTTGGATACATCATCTTCTACAACTTCAGTTAGCCTTTCTCGGAATGACACTTATATGCATCAGAATAACAACTCATTATCTTACAATCCGCAGTCAATGTTGTTTAGAGACAACAATCAGGATGGGGAAATTCAGCTAGATGCTAGGAGCAATGTTCCATTTGGCAATAATATTGATAGTCAACTGGGAGTGCCGCTAAATCCAGATTCTCTTTTGACCAAAGGCACGATAGGGCTGGGAAAGGATTTGTCAAATAACTTTTCTTCAGGAGGCATGCTTGGTAACTATGAGGATAACAGAGATGCTCAGCAGGAACTCTCTTCATCAATTGTTTCCCAGGCATTTGGAGTACCTGATATGACCTTTAATTCAATTGATCCAACAATAAATGATAGTAATTACGTAAATAGGGGCACATGGGCCCCACCTCCTCCTCCACCATCACAGTTTCAGCGAATGAGAACATATACCAAGGTATACAAACGTGGAGCTGTTGGTAGGTCTATAGACATAACCCGGTATTCAGGTTACGAGGAACTTAAACGGGATTTGGCTCGCAGATTTGGCATAGAGGGACAGTTGGAGGACCGGCAGAGGATAGGCTGGAAACTTGTTTATGTAGATCATGAAAATGATGTTTTGCTAGTGGGGGATGACCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAGGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAGCGGTGGCCTTCCAAATCAAGCCTGTAGCAGTTCTGATGGAGGAAACACCTAA 3363 0.4481 MKMQQDGTGAGAASAAAPPNPCEGAEKKSINPELWQACAGPLVNLPPAGTHVVYFPQGHSEQVAASLKKDVDGQIPNYPNLPSKLLCLLHNVTMHADPETDEVYAQMTLQPVPSFDKDALLRSDFALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGICDLDPVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPREPGMADEDPSDFDNLFKRTMPWLGDDACMKDPQALSGLSLVQWMNMQQNPALSSSLQPSYMQSFSGSVLQNLPGADIARQLGFCSPQISQSSNVTFNPQRLLQTPQHVDHLQKITSASSPLGTVVQPPQQLGDITQQSRQNVGNQALPQSQIQSQLLHAQNIVQPNNVLQQQQPSIQNHQLHRNLSQNLSQPQQQQTVMGQNQQQNLIQSSMPDHVSQQLQVSDNQIQLQLLQKLQQQQQTLLAQQSVVPQSTQLSQIQDQQRQLLDPTHGFSRALTSTQVLEIPPILQNSLPDSNSIPHQMTKNNGQTNNVQFSHPTQQAKLQQQQPGTLSDMSGHVGLPPAPTANKLSAAGSSILTGAAGAGQSVITDDIPSCSTSPSTNNCANTIPHMNSRIHRNTTIGDDMAQSAATILSPGAFETMSSNASLMKDFQLKSEVKPSLNISKSQNQGSLSAHVYLNGGAAQTDYLDTSSSTTSVSLSRNDTYMHQNNNSLSYNPQSMLFRDNNQDGEIQLDARSNVPFGNNIDSQLGVPLNPDSLLTKGTIGLGKDLSNNFSSGGMLGNYEDNRDAQQELSSSIVSQAFGVPDMTFNSIDPTINDSNYVNRGTWAPPPPPPSQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKRDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGSGGLPNQACSSSDGGNT 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral871g00007 1120 ProSiteProfiles PB1 domain profile. 1008 1092 IPR000270 GO:0005515
Pral871g00007 1120 Pfam B3 DNA binding domain 137 238 IPR003340 GO:0003677
Pral871g00007 1120 MobiDBLite consensus disorder prediction 1099 1120 - -
Pral871g00007 1120 Pfam AUX/IAA family 1007 1093 IPR033389 -
Pral871g00007 1120 MobiDBLite consensus disorder prediction 1 27 - -
Pral871g00007 1120 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 627 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral871g00007 1120 SMART B3_2 137 239 IPR003340 GO:0003677
Pral871g00007 1120 Pfam Auxin response factor 263 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral871g00007 1120 SUPERFAMILY DNA-binding pseudobarrel domain 125 266 IPR015300 -
Pral871g00007 1120 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
Pral871g00007 1120 Gene3D - 301 372 - -
Pral871g00007 1120 Gene3D - 135 238 IPR015300 -
Pral871g00007 1120 SUPERFAMILY CAD & PB1 domains 1010 1086 - -
Pral871g00007 1120 CDD B3_DNA 136 228 IPR003340 GO:0003677
Pral871g00007 1120 FunFam Auxin response factor 301 372 - -
Pral871g00007 1120 Gene3D - 1003 1097 - -
Pral871g00007 1120 MobiDBLite consensus disorder prediction 685 719 - -
Pral871g00007 1120 FunFam Auxin response factor 135 239 - -
Pral871g00007 1120 FunFam Auxin response factor 1003 1097 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral871g00007 Pral-Chr871 103916 111308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral871g00007 19 498 B3 DNA Binding Superfamily AT1G19220 71.222 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral871g00007 AUX_IAA 4.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral871g00007 - - ccaj:109803454 1739.55