Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral866g00004 ATGTGCTGTGATTTGGAGCGGTTAAAGCTAGCACCGTTTCCAGCAGCGTCTTTAATTTTGTCAAGCAACACTCCAACTCGAAACGGGAAGATGAATCACTTGACTGTGGAAACTGAAGATAGTTTTGCAAACCTGCTTGACCTTGCAGCCAATAATGACGTTGAGCATTTCAAAAGATCAATTGAACGTGATCCTTCCTCTGTTGACGAGGTTGGACTGTGGTATGGTCGCCAGAAGGGCTCAAAGCAAATGGTCAACGAGCACCGGACACCTTTGATGGTGGCTGCTACTTATGGTAGCATTGATGTTATCAGGGTGATACTTTCATCATCTGATGCAGATATTAATCGATCATGTGGGCTTGACAAAAGCACAGCCCTTCATTGCGCGGCATCAGGTGGTGCTGTAAATGCTGTTGATGTGGTGAAACTACTTTTGGCAGCTGGCGCTGACCCTAATGCTGTCGATGCTGATAGTCACTATCCTGTTGATGTTATTGTGGTACCTCCCAGGCATGCACATTTGAAAAGTATTCTTGAAGAACTTCTTCAAACAGATTGTTCCATGGCAGGGTGTGGTCTTAGGGTGGTAACGTCTACAACAAATTCAAACTCTCCCCCTCCGTCAACTTCTCCAGAGAATGGGTCTCCTTCTGCACTAGAGTTCCATTTGAAGCTAAAGTTAAAGGAGGCCAACGCTTTATCTGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCTGACATCAAAAACAGCATCTACTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCATGTTCACGTGCATATTCACATGATTGGACTGAATGCCCTTTTGTCCACCCAGGAAATGCTCGGAGAAGGGACCCGAGGAAATTTCATTATAGTTGTGTCCCTTGTCCTGATTTTCGGAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTTGAGTGCTGGCTGCACCCAGCTCAGTATCGGACCCGCCTTTGCAAGGATGGGACCAGTTGTTCAAGAAGAGTTTGTTTCTTTGCCCATACAGCTGAGGAACTTCGGCCTTTGTATGTTTCAACTGGTTCTGCTGTTCCATCACCACGCTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTACCTGGCTCCCCTTCTTCAATGTCTGTTATGTCTCCTTCACCGTTCACCCCACCCATGTCACCGTCTGCCACTGGCATGTCACACTCTTCTGTTGCTTGGCCTCAACCTAATGTTCCAAACCTGCATCTGCCGGGAAGTAATATTCATTCCAGTCGTTTGAGATCTTCACTCAGTGCTAGAGATATCCCGGTGGAAGACTTTGACGTGTTGTCTGACTATGATATTCAGCAGCACCAGCTTCTTAATGAGATGTCTTGCCTTTCCCAGCAATCTATGAATTCTAATAGCCTAAACCGATCTGGTCGGATGAAGACCCTGACCCCATCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTCGGTTTGCTGATCAAACATTGAGTTCAGCTGTCTTTTCACAACATAAATCAGCTCTCCTTAATCAATTTCAGCAGCAACAAAGCTTGCTTTCACCTGTGAATACAAATTTTTCTTCCAAGAATGTTGAACACTTGTTACAGGCCTCGTTCCAAACGTCAGGCAGGATGTCTCCACGTAATGTGGAACCTATCTCACCGATGAGCTCTAGGCTTTCTGTGCTAGCTCAACGTGAAAAGCAGCAGTTTCGTAGCCTTAGCTCTCGGGATCTTGGCTCCAACTCTGCCGCTGCTGTTGCCGCTGCTTCTGGTTTCAATGACAGTTCTTGGTCAGAATGGGGATCCACCAATGGTAAATTGGATTGGGCCGTCAATGCTGATGATTTGGGCAAGCTCCGCAGATCATCGTCGTTCGAGTTTGGTAGCAATGGCGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCAACTGAGATTAAGGAGAAATTGGGAACAGCTGTGTCAAGTGTTGCGGGGGGTGCATACACTAGTGAGGGATAG 2082 0.4635 MCCDLERLKLAPFPAASLILSSNTPTRNGKMNHLTVETEDSFANLLDLAANNDVEHFKRSIERDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIRVILSSSDADINRSCGLDKSTALHCAASGGAVNAVDVVKLLLAAGADPNAVDADSHYPVDVIVVPPRHAHLKSILEELLQTDCSMAGCGLRVVTSTTNSNSPPPSTSPENGSPSALEFHLKLKLKEANALSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGXNARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSATGMSHSSVAWPQPNVPNLHLPGSNIHSSRLRSSLSARDIPVEDFDVLSDYDIQQHQLLNEMSCLSQQSMNSNSLNRSGRMKTLTPSNLDDLFSAESSSPRFADQTLSSAVFSPXHKSALLNQFQQQQSLLSPVNTNFSSKNVEHLLQASFQTSGRMSPRNVEPISPMSSRLSVLAQREKQQFRSLSSRDLGSNSAAAVAAASGFNDSSWSEWGSTNGKLDWAVNADDLGKLRRSSSFEFGSNGEEPDLSWVQSLVKESPTEIKEKLGTAVSSVAGGAYTSEG 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral866g00004 695 FunFam Zinc finger CCCH domain-containing protein 66 256 324 - -
Pral866g00004 695 PRINTS Ankyrin repeat signature 141 155 IPR002110 GO:0005515
Pral866g00004 695 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Pral866g00004 695 MobiDBLite consensus disorder prediction 198 217 - -
Pral866g00004 695 SUPERFAMILY Ankyrin repeat 49 168 IPR036770 -
Pral866g00004 695 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872
Pral866g00004 695 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Pral866g00004 695 PANTHER UNKEMPT FAMILY MEMBER 47 671 IPR045234 -
Pral866g00004 695 MobiDBLite consensus disorder prediction 198 218 - -
Pral866g00004 695 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Pral866g00004 695 Pfam Ankyrin repeats (3 copies) 83 156 IPR002110 GO:0005515
Pral866g00004 695 Gene3D - 299 361 - -
Pral866g00004 695 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 323 IPR000571 GO:0046872
Pral866g00004 695 MobiDBLite consensus disorder prediction 482 504 - -
Pral866g00004 695 MobiDBLite consensus disorder prediction 399 423 - -
Pral866g00004 695 Gene3D - 38 188 IPR036770 -
Pral866g00004 695 SMART ANK_2a 122 154 IPR002110 GO:0005515
Pral866g00004 695 SMART ANK_2a 87 117 IPR002110 GO:0005515
Pral866g00004 695 SMART c3hfinal6 333 356 IPR000571 GO:0046872
Pral866g00004 695 SMART c3hfinal6 298 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral866g00004 Pral-Chr866 38729 42573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral866g00004 36 695 C2H2 Transcription Factor Family AT5G12850 55.162 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral866g00004 Ank_2 7.2e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral866g00004 - - ccaj:109796653 987.252