Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral85g00017 ATGGCTTTCTTCCCTGCAAATTTTATGCTTCAAACCCCTCACCCAGAAGATCACCACCACCACCACCACCACCATCATCAGCCTCCTTCTCTCAACTCTCTCCTCACTTCATGTGCTCCACAAGATTATCACCATCACGGGGGTCCTTCTTTTCTAGGTAAGAGATGCGTGTCATTTCCAGGAATTGAACTGGGTGAAGAAGCTAATAATGCTGAGGAAGACTTGTCTGACGATGGGTCTCAGGCGGGGGAGAAGAAAAGGAGGCTGAACACGGAACAGGTTAAGACACTTGAGAAGAGCTTTGAGCTGGGAAATAAGCTTGAACCAGAGAGAAAAATGCAGCTTGCAAGGGCTCTAGGATTGCAGCCCAGACAGATCGCGATATGGTTCCAGAACAGAAGAGCTAGGTGGAAGACTAAGCAGCTCGAGAAAGACTATGATGTTCTTAAAAGGCAATATGATGCTCTTAAGGCAGATAATGATTCTCTTCAAGCTCAGAACCAAAAACTCCAAGCTGAGATATCTGCACTGAAGAACAGAGAGCCTACTGAATCAATCAACCTCAACAAAGAAACAGAGGGATCTTGCAGCAACAGAAGTGAGAACAGTTCTGAGATTAAGTTTGATATAACAAGAACACCAACTATGGATAGTCCTGATCTATCCACACATCAAACAAGCATAACCTTATTTCCATCTTCTTCTGCTTCTGTTAGGCCTCCTTCTGCATCAGGAGGAGTGGCTCCCCAGCTCTTTCAAGCTTCTTCAAGACCAGAGCTTCATCAGTGCGAGAAGGTAGATCAGATGGCGAAAGAAGAGAACTTGAGCAACATGTTTTGTGGGATCGATGATCAATCAGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAACTGA 897 0.4537 MAFFPANFMLQTPHPEDHHHHHHHHHQPPSLNSLLTSCAPQDYHHHGGPSFLGKRCVSFPGIELGEEANNAEEDLSDDGSQAGEKKRRLNTEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDALKADNDSLQAQNQKLQAEISALKNREPTESINLNKETEGSCSNRSENSSEIKFDITRTPTMDSPDLSTHQTSITLFPSSSASVRPPSASGGVAPQLFQASSRPELHQCEKVDQMAKEENLSNMFCGIDDQSGFWPWLEQQHFN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral85g00017 298 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Pral85g00017 298 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Pral85g00017 298 SMART HOX_1 83 144 IPR001356 GO:0003677
Pral85g00017 298 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Pral85g00017 298 SUPERFAMILY Homeodomain-like 78 142 IPR009057 -
Pral85g00017 298 Gene3D - 77 146 - -
Pral85g00017 298 MobiDBLite consensus disorder prediction 12 37 - -
Pral85g00017 298 FunFam Homeobox-leucine zipper protein ATHB-13 77 144 - -
Pral85g00017 298 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Pral85g00017 298 MobiDBLite consensus disorder prediction 67 89 - -
Pral85g00017 298 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Pral85g00017 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 72 222 IPR045224 GO:0003700
Pral85g00017 298 MobiDBLite consensus disorder prediction 181 205 - -
Pral85g00017 298 Coils Coil 132 180 - -
Pral85g00017 298 CDD homeodomain 85 141 IPR001356 GO:0003677
Pral85g00017 298 Pfam Homeodomain 85 138 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral85g00017 Pral-Chr85 441389 443260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral85g00017 1 298 Homeobox Transcription Factor Family AT1G69780 60.714 6.76e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral85g00017 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral85g00017 K09338 - gmx:100808033 449.129