Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral854g00015 ATGGAGTCTCATCGTGTTGAAGATATTCGCATATACGAGTGTAGACTTCATAAATGGGACCCAGCTATCCAATGCGATTTTCTTGATGGGCATCCAGAATCTCCTCCCCCAGAAGAGGAATACTTCCAGTTTAGAGTTGTTTTGAAAGAACGCTATTACAATATTTCAAACATGCATCATGACAGAACAGCAGATACAAATACTACTGAGTACGATTTTTTCAGCATCCCATACGCGTCAAGGAAGGAAGCAACGGATTATATGATTTCTATTCTTAATATTCCGGAAGCAAATCGCAAATCCATGGCGCAGCAAATTCTGGATTACATGGACTTCGTGCCTGATCTTGACAATTCATACAACTTGTTCGTTATGATGCTGGTGAATGTTGATATTTTTTATCACGACTGTGATAAAGCTATGGAAAGAGGTGCCAAGGAGGACCAAGGTTGCAGATTGAAAGGAGTGAAGATTCAAGAGGAAGAGGTTGGTGAATGTGGAATCTGTTGGGAAAATTTTAGAATTGACACGGTTCAAATGCCTTGTTCCCATTTATTTCATGGGAACTGCATTTTAAGTTGGCTTTTGAGGAAGAATAATTGTCCCATGTGTCGCTTTCAAATGCCTTCAATAGGGACGGATTCCTAG 648 0.4012 MESHRVEDIRIYECRLHKWDPAIQCDFLDGHPESPPPEEEYFQFRVVLKERYYNISNMHHDRTADTNTTEYDFFSIPYASRKEATDYMISILNIPEANRKSMAQQILDYMDFVPDLDNSYNLFVMMLVNVDIFYHDCDKAMERGAKEDQGCRLKGVKIQEEEVGECGICWENFRIDTVQMPCSHLFHGNCILSWLLRKNNCPMCRFQMPSIGTDS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral854g00015 215 ProSiteProfiles Zinc finger RING-type profile. 166 205 IPR001841 -
Pral854g00015 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 209 - -
Pral854g00015 215 SMART ring_2 166 204 IPR001841 -
Pral854g00015 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 214 IPR013083 -
Pral854g00015 215 Pfam Ring finger domain 165 205 IPR001841 -
Pral854g00015 215 SUPERFAMILY RING/U-box 165 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral854g00015 Pral-Chr854 228546 229193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral854g00015 153 210 C3H Transcription Factor Family AT5G01980 46.032 3.85e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral854g00015 - K11982 pcin:129316560 82.4185