Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral838g00006 ATGCCTGATTGCTCTTATTTTTTGCAAGGTTTATGCACAAATAGAAATTGCCCCTATAGACATGTTAATGTAAACCCTAAGGCATCCGTTTGTGAAGGATTCCTCCGGGGATATTGTGCTGATGGCAATGAGTGTCGGAAGAAGCACACCTATGTCTGCCCTACGTTTCAAGCAACAGGAAGCTGCACCCAAGGGAGCAAGTGCAAACTTCATCACCCCCAAAAACAAGGAAAGGGAAAGAAAAGGAAGAGATGCGTGGATCAGAGGAACTGTAAAAGGCGATATTTTGGTTCTTTATGGATTGATGTGTCTGAACCTGGGACGATGGTTGTAGCTCCAAGGCAAGGGGAACAAAATAAGGATGGCCTTGAAGGAGAACTTGCTGACTATATCAGTCTAGATGTCGAGGATGAAGACGTTGCTGAACTTCCGGGACGAGCAAGGGAGCAATCAACATTGTGTGATGGTGAACCTGGGGACATAGTATTGGATGATGAGGATGAACTCATTAAACCAGTTCTGATAATGAAAAAGGATATTAGGGCCAAGACATCTCCTGTCTGA 564 0.445 MPDCSYFLQGLCTNRNCPYRHVNVNPKASVCEGFLRGYCADGNECRKKHTYVCPTFQATGSCTQGSKCKLHHPQKQGKGKKRKRCVDQRNCKRRYFGSLWIDVSEPGTMVVAPRQGEQNKDGLEGELADYISLDVEDEDVAELPGRAREQSTLCDGEPGDIVLDDEDELIKPVLIMKKDIRAKTSPV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral838g00006 187 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Pral838g00006 187 SMART c3hfinal6 25 51 IPR000571 GO:0046872
Pral838g00006 187 SMART c3hfinal6 52 74 IPR000571 GO:0046872
Pral838g00006 187 SMART c3hfinal6 1 23 IPR000571 GO:0046872
Pral838g00006 187 PANTHER CCCH ZINGC FINGER 1 179 - -
Pral838g00006 187 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 74 IPR000571 GO:0046872
Pral838g00006 187 FunFam Zinc finger CCCH domain-containing protein 7 26 87 - -
Pral838g00006 187 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Pral838g00006 187 Gene3D - 23 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral838g00006 Pral-Chr838 38154 41402 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral838g00006 zf-CCCH 0.00023 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral838g00006 - - pcin:129303221 319.316