Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral780g00001 ATGACGTCAGAACATCTGGCTTCCTCGGTGGTTTCTGCCGTACAATCGATCCAACGTTCATTGACTGATCTCTGTGATCACGAACACCATTACTCGTTTGATAATCCCCGACAGTTCTCGGGGTTGGCCCGGCGACTTCAGCTTGTCGTCAACCAGGTACTCCTGTCGTTTCAATCACTGTCGCCGGGGAGCTTCCCGTCGTCGGTGCAGACCACCCTTAAAGGAATGTCCAGTGATCTGTCCAAGGCTGCAGAAGTTGTTTCCGTTTATGAGAAAAGAAGCAAGATATTCGTCTTGATCAACTGCAAGTCGCTGTGCTTATCTCTTCAGGAGCACACTTTCTCCATAGGAGGCTGGCTCGCCTTGCTCGATCAGGCTCTTCAAGACGACCCTGACCTCCAAAAGAAAGCTTCGGATCTTTCCAGAGACATGAAGCTCGTTCAGTTCAGGGTTACAGAGACCGAAGAGAGAGTTCAATGTACGCTGGAAAAAGAAGGGGTTGGAAGACCAACAACCAAGGCGGTGCAGAGTGCTATTGTCATGGATTTGGCTCGCGCCTTGGGAATTGACCCTGACGATCATGCAGAGTTGTCTAACGAAATAAAGCTGTTCAAGAATGACCTATTGAGCTCAAATTCTTTATCAGAGCGGCGGATTTTAGTTTCCCTTGAAAGGATTTTGAATAACTGGTCTATTGAACCTGCAATTGAGACTCGAAAATTGGACTTCGACCTTGAAGACGATGCAGCGATTCCCCCCTTCAAAAATTTTCTGTGCCCATTGACCAAGGAAGTGATGAAGAATCCCGTAGTTCTGGAAACTTCCCAGACCTATGAACGGACTGCTATAGAGTACTGGTTCGACAGGTGTATTCAAGATGCACGTGACCCAACTTGTCCTGTAACTGGGAAGGTTCTCAAATCCTTGGAACTGAAACCCAATATTGGATTGGCAGGGGCAATAGATGAGTGGGTTAACAGGGTTATAGAGTATCGAGTCAAATCTGCTGCTGACCATTTGAATGAGGAGCCACTTTGTATAGATCACGTTGAGAGATCTTTGGATAATATTTATGAGGTTTCAGAAGAACATCCTGCTAGCAGATACGTAATCAGGAATGCTGGAATTGTACAACTGATAGGGAAGCTTCTTACTGATAGCTCAAAAGTTATTGGATCACGGCTGAGAAGCAAAGCTTTGACGGCTTTAGTTAGTATGGCTAAAGATGAAGAAAGCAAGAAAATAATGCTCGAAGGGAGTATCACAAGATTGGCTGTACACAGTCTTACTGGTAGCTCAGAGAAAGAGAGGGAGTATGCTGTGAAGTTATTACTGGAGTTCTCCAGCGATGAAGCTTATTGCATAGGAGTTGCATCAGAGAAAGGTGCATTGGTTCTCCTCACAAGTATGGCAGGAAATCTAGAGTTTCCTGCTTTGTCCAAGTTAGCCGAGGAAGTCTTAAAGCAGTTGGAGAGGGTGGAGGATAATGTGCAACGTTTAGCAGCATCTGGAAGATTTGAACCTTTACTTTCACGGTTGCATGATGGTCCTGATGCTGTAAAGATAGAGATGGCGTCTCTGCTTGGAAGGATGACCTTGACAAACAGTAATAAAGAGCAAATTGCCAGGCAAAGTGCTGGAGTACTTGTTGACTTGTTGTCGAAGCCAGAAGGAAGAGAACCAAGTCTGCAAGCATTATATAACTTGTCAGGGTTGGATGACAATGCAACCATCCTTGTCAAGTCTCCAGTCTTTCCGTCTCTTATTGATGTTCTATTTGATGGCCAGGAGCCTTCAAATGAAATTAAAACACTAGCTGCTTCAACAATTGCAAATATAGTATCAAAGCCAGGGCGTTGGGAATTAGCATCTGCTGACATGAAGGGGAGTTCAATGCAGTCAGAAAGTGTAGTTTTCAAGCTTCTGCAACTTTTAAACTCGGTGTCATCTCAATGTCAAGTATATGTTCTTCGCATTCTCTATGGAATAACATCTTCCCCGCAGGCATCAGAGTCAGTTGCTTTGCATATAAAATCTGGGGATGGCTTTAAAACGATCACACAATTTCTTGAAAACCCAGAATTCGAACTCAGAATGTATGCTTTGAAGCTTTTGAGACTATTATCTGAACTGTTCAGTCAAGATCTAGGAAATGAGCTGAGACTTTCCAACAAGCTCACCATGCTCAAAGAAAAAATATTAGATGATCAATCTGCAGAGGAGGAGAGAGCAACTGCAGCATGTATACTCGCCAACCTTTCCTTAACAGAGAATGATATTAAATCGCTTTTGGGAGGTGATTTCATTAGATGGATCGTCTCCACTCTCAAGAACCAGAGGCATAGCTCCAATGCAAGGATTTCGCAGACTGCATTAAGCTTGCTGGAAGGTCTTCTTGGCCTCTTGCTTCACTTCACTACGAACCTTGATGAGCAAAGTCTAACCATTATCAGAGAAAATCGTCTCATGACCATTTTCTGTGAACAATTGGAGTATACTTCCAAACTAAAGGTAAAAAGACTTGCTGCTCTTGGATTAAAAAGCTTGTCAGAAATTGGAAGGACAGTTACTTCTAGGGACGCTGAACCGTCACGTTCCAATGGTTTCTGCTATTCCCTCCTGTTCATGTGTGGGAGGACCTCTTATCAGAACCTTTCATGTCCAATTCACAACAGTTACTGTGAGGAAGATAGTCAATTGTGCCTGCTAAGGAGCAACTGTATAAAGCCTCTAAATGATCTCCTCAATGATAACAATGACACTAGTGTTCAAATTGCTGCACTGGAGGCACTTTCAACACTAGTTTTGGATTATTCTTCAAATACTTTCAAGAGAGCAGCTGATGAGCTTGCGCAATTGGGTGTGGTTGATTCTGTGATCAATCTTTTCACAGAGGCTAGATCTGGCGAGCTTCAAGAGAAGACCGTTTGGATCATAGAGAAAATATTGAGAGTGGAAAATCACATACCTAAGTACTCACTTAATCAGTCTCTTGTGAGGGGCTTGGTTGAAGCCTTTAAGCATGGGAATCCTAACACCAAGGTGCTTGCTCAACATGCTTTAACCTGCCTAAAGCAAATATCAGTTCTAAGTGAGAAGACATCAAGTCAACCTCAAGCTAGGAGGTAG 3129 0.4356 MTSEHLASSVVSAVQSIQRSLTDLCDHEHHYSFDNPRQFSGLARRLQLVVNQVLLSFQSLSPGSFPSSVQTTLKGMSSDLSKAAEVVSVYEKRSKIFVLINCKSLCLSLQEHTFSIGGWLALLDQALQDDPDLQKKASDLSRDMKLVQFRVTETEERVQCTLEKEGVGRPTTKAVQSAIVMDLARALGIDPDDHAELSNEIKLFKNDLLSSNSLSERRILVSLERILNNWSIEPAIETRKLDFDLEDDAAIPPFKNFLCPLTKEVMKNPVVLETSQTYERTAIEYWFDRCIQDARDPTCPVTGKVLKSLELKPNIGLAGAIDEWVNRVIEYRVKSAADHLNEEPLCIDHVERSLDNIYEVSEEHPASRYVIRNAGIVQLIGKLLTDSSKVIGSRLRSKALTALVSMAKDEESKKIMLEGSITRLAVHSLTGSSEKEREYAVKLLLEFSSDEAYCIGVASEKGALVLLTSMAGNLEFPALSKLAEEVLKQLERVEDNVQRLAASGRFEPLLSRLHDGPDAVKIEMASLLGRMTLTNSNKEQIARQSAGVLVDLLSKPEGREPSLQALYNLSGLDDNATILVKSPVFPSLIDVLFDGQEPSNEIKTLAASTIANIVSKPGRWELASADMKGSSMQSESVVFKLLQLLNSVSSQCQVYVLRILYGITSSPQASESVALHIKSGDGFKTITQFLENPEFELRMYALKLLRLLSELFSQDLGNELRLSNKLTMLKEKILDDQSAEEERATAACILANLSLTENDIKSLLGGDFIRWIVSTLKNQRHSSNARISQTALSLLEGLLGLLLHFTTNLDEQSLTIIRENRLMTIFCEQLEYTSKLKVKRLAALGLKSLSEIGRTVTSRDAEPSRSNGFCYSLLFMCGRTSYQNLSCPIHNSYCEEDSQLCLLRSNCIKPLNDLLNDNNDTSVQIAALEALSTLVLDYSSNTFKRAADELAQLGVVDSVINLFTEARSGELQEKTVWIIEKILRVENHIPKYSLNQSLVRGLVEAFKHGNPNTKVLAQHALTCLKQISVLSEKTSSQPQARR 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral780g00001 1042 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Pral780g00001 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 337 IPR013083 -
Pral780g00001 1042 SUPERFAMILY RING/U-box 247 327 - -
Pral780g00001 1042 Coils Coil 483 503 - -
Pral780g00001 1042 SUPERFAMILY ARM repeat 353 1024 IPR016024 -
Pral780g00001 1042 ProSiteProfiles U-box domain profile. 252 331 IPR003613 GO:0004842|GO:0016567
Pral780g00001 1042 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1031 - -
Pral780g00001 1042 SMART arm_5 810 851 IPR000225 GO:0005515
Pral780g00001 1042 SMART arm_5 943 984 IPR000225 GO:0005515
Pral780g00001 1042 SMART arm_5 364 408 IPR000225 GO:0005515
Pral780g00001 1042 SMART arm_5 572 615 IPR000225 GO:0005515
Pral780g00001 1042 SMART arm_5 534 571 IPR000225 GO:0005515
Pral780g00001 1042 SMART arm_5 894 936 IPR000225 GO:0005515
Pral780g00001 1042 Coils Coil 911 931 - -
Pral780g00001 1042 Gene3D - 339 854 IPR011989 -
Pral780g00001 1042 Gene3D - 889 1040 IPR011989 -
Pral780g00001 1042 CDD RING-Ubox_PUB 257 311 IPR045210 -
Pral780g00001 1042 SMART Ubox_2 256 324 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral780g00001 Pral-Chr780 14889 19964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral780g00001 254 1031 U-box Gene Family AT1G20780 29.500 8.57e-89 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral780g00001 - - pcin:129304037 1658.66