Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral769g00005 ATGGAGATATCGTTGTTAAATGTACTTGTTAATGTGATATCCTCGTTTTCGCACTTAAGATTTTCCAGAAACGTGAGCTCAGAACCTATGTTGAAGTATTACCAAAAGGAAGAGGAGATACTCAAGCTGTTAAAGCCAACACTTGAAGCCATCACTAATACTGATTTAGCCTCTGATGAAGTGCTTCTGAAGATATTTGAAGAACTGAACCAGGCTGTTCAGGAACTTAGGGAGCTTTTCGAGAGTTGGCAACTATTGTGTAGCAAATTTTACATTGTTCTACAAGTTGAATCCTTGATATCTAAGATTCAGATTATGGCACTCAACATTTTCAACCAACTGAAAGCTTCCCATCAATGTCTCCCTAATGGATTAAGTTTTTCACACATAGAGCACTGTATTGAGAAAGTAAAGAATTTGGGACATGAAGAAACATCATTTATCATCAAGGAAGCTATCATGGAACAAGTGGAAGGCTTAGGTCCTAGCTCAGAGGTCCTTGAAAAACTTGCTGAGAATTCGGGCCTGAGCTCTAATCAAGAGATTCTGATTGAGGCTTTGACACTTGAAAAGTTGAAGGAAAATGCAGAGCAGATTGAAAATACTACAGAAGCTGAATATCTACGCCAGATAATTACTCTTGTAACTTACATGCATGAGAGACTTATAATGCTCAAGGAAGCCCAGATCTCTAGCCAAGTTCCAGTACCTGCAGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGAAAGATCCTGTGATTGTGTCATCAGGGCAAACTTATGAGCGAGTTTTCATTAAGAAGTGGATTGATCTAGGGCTTAACGTTTGTCCGAATACACGTCAGACTTTGGCTCATACCAACCTAATACCAAATTATACTGTGAAGGCATTGATTTTAAACTGGTGTGAATTGAACAATGTCAAGCTAGTTGATCCTTTAGTGTCCTCAAACTTGAATCATTGCAGCTCAACTTCAGAAGGTTCTTCTAATGACATGACTTGTAGGCAAAGTTTGGATATTTTAAGAATATCACAGACAAGTTCTGATAACATGTCTGTTAGCTCAGATGAAATCAGGGCAGATTTAGATGGCCAAGATTCGTCGTCACAATCTAGAAGGGAATCTTCCAATGCCTTAAGCTTAGAACAATATCAAACTCATGTTAGAACTGATCTTGATTCCACTGCATCTTTGAATGAGAATTTTCCTCAAGAAACAAAAGGTGATGACAAAGTCTTAAAAGCTCAGATGACTCCATCATCAGAGGCAAGGTCTGGAATCTTAAGTATATGGCAGCAACAACCAAAGAATTTAAGGTTAGGATCTTCACTTGTTGAAACTAGACCTAGTCCTTCTAGAATTGAAACCCAAGTTCAGAATTGGGCTAAAGAGTTGAAGAGCTCTTCAATTGATGCTCAAAGAGAAGCGACAGCAGAACTACGCCTTCTTGCTAAGCACAATATGGAAAATAGAATTATGATTGCAACTTGTGGAGTCATTACTTTATTAGTCAACCTACTCCAATCAACTGATACAAAGATCCAAGAAAATGCAGTTACGGCGCTTCTAAACTTATCGATCAACGACAATAACAAATTTGCAATTGCAGATGCTGGTGCAATTGATTCTCTAATTCATGTTCTTGAAACAGGAAGTCCTGAAGCCAAGGAGAATTCTGCAGCTGCACTTTATAGCCTATCAATGATGGAAGAAAATAGGATTAGTATAGGGAGATCACGGGCAATCAAGCCATTGGTAGGTTTACTAGCAAATGGAACCCCAGGAGGGAAAAAGGATGCTTCCACTGCATTGTTCAATCTGTCAATATTTCATGAAAACAAAGGACGGATTGTGCAGGCCGGCGCCATAAAGCACCTTGTGGGTTTAATGGATCCAGCAGCCGGAATGGTAGACAAGGTGGTGGCCCTTTTGGCAAATCTTGCATCAATTCCTGAAGGAAGAACTGAAATTGGTCATCAAGGTGCTATTCCTATTCTAGTTGATGTAATTGAGTTGGGTTCCGCAAGAGGGAAGGAAAATGCAGCTGCCACTCTTCTACATATTTGTTCAAATAGCACCAGGTTCTTGAGCTTAATGATCCATGAAGGAGCCATCCCACCATTAGTAGCATTATCACTATCAGGCACCCCAAGAGCCAAAGAAAAAGCACAGGCTCTACTTAACCATTGTAGAAGTCAAAGACATGGTAGTGCTAGATGA 2223 0.3968 MEISLLNVLVNVISSFSHLRFSRNVSSEPMLKYYQKEEEILKLLKPTLEAITNTDLASDEVLLKIFEELNQAVQELRELFESWQLLCSKFYIVLQVESLISKIQIMALNIFNQLKASHQCLPNGLSFSHIEHCIEKVKNLGHEETSFIIKEAIMEQVEGLGPSSEVLEKLAENSGLSSNQEILIEALTLEKLKENAEQIENTTEAEYLRQIITLVTYMHERLIMLKEAQISSQVPVPADFCCPLSLELMKDPVIVSSGQTYERVFIKKWIDLGLNVCPNTRQTLAHTNLIPNYTVKALILNWCELNNVKLVDPLVSSNLNHCSSTSEGSSNDMTCRQSLDILRISQTSSDNMSVSSDEIRADLDGQDSSSQSRRESSNALSLEQYQTHVRTDLDSTASLNENFPQETKGDDKVLKAQMTPSSEARSGILSIWQQQPKNLRLGSSLVETRPSPSRIETQVQNWAKELKSSSIDAQREATAELRLLAKHNMENRIMIATCGVITLLVNLLQSTDTKIQENAVTALLNLSINDNNKFAIADAGAIDSLIHVLETGSPEAKENSAAALYSLSMMEENRISIGRSRAIKPLVGLLANGTPGGKKDASTALFNLSIFHENKGRIVQAGAIKHLVGLMDPAAGMVDKVVALLANLASIPEGRTEIGHQGAIPILVDVIELGSARGKENAAATLLHICSNSTRFLSLMIHEGAIPPLVALSLSGTPRAKEKAQALLNHCRSQRHGSAR 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral769g00005 740 SUPERFAMILY RING/U-box 233 312 - -
Pral769g00005 740 MobiDBLite consensus disorder prediction 347 383 - -
Pral769g00005 740 SMART arm_5 529 569 IPR000225 GO:0005515
Pral769g00005 740 SMART arm_5 570 610 IPR000225 GO:0005515
Pral769g00005 740 SMART arm_5 651 691 IPR000225 GO:0005515
Pral769g00005 740 SMART arm_5 611 650 IPR000225 GO:0005515
Pral769g00005 740 SMART arm_5 488 528 IPR000225 GO:0005515
Pral769g00005 740 PANTHER U BOX DOMAIN-CONTAINING 29 731 - -
Pral769g00005 740 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Pral769g00005 740 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Pral769g00005 740 Gene3D - 450 739 IPR011989 -
Pral769g00005 740 CDD RING-Ubox_PUB 237 289 IPR045210 -
Pral769g00005 740 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Pral769g00005 740 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Pral769g00005 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Pral769g00005 740 Pfam Armadillo/beta-catenin-like repeat 529 568 IPR000225 GO:0005515
Pral769g00005 740 Pfam Armadillo/beta-catenin-like repeat 490 527 IPR000225 GO:0005515
Pral769g00005 740 Coils Coil 66 86 - -
Pral769g00005 740 FunFam RING-type E3 ubiquitin transferase 443 737 - -
Pral769g00005 740 SUPERFAMILY ARM repeat 465 731 IPR016024 -
Pral769g00005 740 Coils Coil 189 209 - -
Pral769g00005 740 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral769g00005 Pral-Chr769 223081 229398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral769g00005 1 740 U-box Gene Family AT5G67340 48.465 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral769g00005 - - pcin:129303726 1028.47