LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral736g00001	ATGTCGGATGACATGCTTGTGCATTTCTCTTCCAACTCCTCTAACCAATCGGATCAATCCTTGCCTACCAAGATTGCAAAGCTTGAAGCTCGAATGGTAGGCAAGGCTTCGTCCGCAGTTGCCACCACTCTGTCGCCTGCCCAGCAGTCAACCTGGTCTACTGTTCCTTCAGCTGCGAAATTTGGGGGACCTGCCGAGGATTTGGTTGGACCCTCCACTTCGAGTGATTCCGATGATGATAATGGCGGGGAATTCCTCATACAAGCCAACACACAGAAGCGCCAAAAACTCCAAGAAGATGACCACTCAAAGATTTTTGAACATGTCGAGGTAGTTACTGATGGAAGGCAAACTAGCTTGGATGTTGTGGAGGCAAAAGCTAGTGCAGATACGAATAGGAAAAAAAATGGTCGTGGAAGAGGGAGCTCTGGTTCTGGTAGGGGACGTGGTTCCCGAGTTACTGATCAGAACAGAACACATATATCTCCTCCAGCAGTTTTGGCCTCCAATGGTCAGCTGGACAATGCATGCCGAGAGGGAAGACTGAAAGATCAGATTCGCAACGACAATTGCACTTCATTAGAGGAGGAGAATGCATCTTTACGTGCAAAAGTTGTTGCATTGGAGGAGGATCTGAGGAAATCAAAACAAGAGATGTCTGATTACCAGAATCTTTGTCGCCAGTTAGAAAAGGAACTAAAGGATCTGAAAGATCACGAACAGCAAATGAAGCCTAAGAGGACAAAAATAATATCTGATTTGCTGATATCAGTCTCAAAGTCCGAGAGGCAAGAAGCAAGGTTGAAAGTACGACAAGACTCATTGAGGCTGGGAAATGTTGGTGTAATCAGAGCCGGAACTGTCATATCGGAGACTTGGGAAGATGGGCAAGCATTGAAGGATCTTAATGCCCAGCTTAAACAACTGATAGAAACGAAAGAGGCTATTGAGCGGCAGCGCAAGTCATTGAAGAAAAAACAATCTGATAAAGGCGAGGGAACAGATGCAGATACTGGATTACAAGAAGACGATGTCGTCATTCAGGATGAAATCTATAAGTCTCGACTAGCTAGCATTAAACGTGAAGAAGAAGTTATTATGCGGGAGAGGGATCGCTATGAACTAGAAAAGGGAAGACTAATACGTGAGATGAAACGCATACGAGATGAGGATGGCTCACGATTCAACAACTTTCAGATTCTGAACCATCGATATGCCCTGTTAAATCTTCTTGGAAAGGGTGGATTCAGCGAGGTTTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCATGTAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGTTATATTCGGCATGCAATTCGGGAGTATAATATCCACAAGACCTTGGTACATCATCATATTGTTCGTTTGTGGGACATCTTTGAAATAGATCACAATACATTCTGCACCGTTTTAGAGTACTGTAGTGGGAAGGATCTTGATGCTGTCCTTAAGGCAACACCTATATTGCCTGAGAGAGAGGCGAGGGTAATTCTAGTTCAGGTTTTTCAAGGCCTTGTTTACTTGAATAAAAGAACGCAGAAGATTATTCATTATGATTTGAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGCACTGCCAAAGTGACTGATTTTGGTCTCAGCAAAATAGTTGAGGATGATGTGGGATCCCAGGGTATGGAACTAACATCTCAGGGGGCTGGAACTTACTGGTATTTGCCCCCAGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCGAAGGTTGATGTCTGGTCTGCGGGTGTTTTGTTCTATCAAATGCTCTTTGGAAGGCGTCCATTTGGCCATGACCAAAGTCAAGAGCGTATACTACGCGAAGATACAATTATTAAGGCTCGCAAGGTTGAATTCCCTTCTAGACCTACGGTTTCTAATGAGGCGAAGGATTTTATACGGCGATGTTTGACATATAACCAGGCCGAGAGACCAGATGTATTGACCATTGCTCAAGATCCATATCTTACCTACTCAAAGAAGTAA	2052	0.4386	MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKASSAVATTLSPAQQSTWSTVPSAAKFGGPAEDLVGPSTSSDSDDDNGGEFLIQANTQKRQKLQEDDHSKIFEHVEVVTDGRQTSLDVVEAKASADTNRKKNGRGRGSSGSGRGRGSRVTDQNRTHISPPAVLASNGQLDNACREGRLKDQIRNDNCTSLEEENASLRAKVVALEEDLRKSKQEMSDYQNLCRQLEKELKDLKDHEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLIETKEAIERQRKSLKKKQSDKGEGTDADTGLQEDDVVIQDEIYKSRLASIKREEEVIMRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAVLKATPILPEREARVILVQVFQGLVYLNKRTQKIIHYDLKPGNVLFDELGTAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGVLFYQMLFGRRPFGHDQSQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTYSKK	683

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral736g00001	683	MobiDBLite	consensus disorder prediction	43	57	-	-
	Pral736g00001	683	Coils	Coil	191	242	-	-
	Pral736g00001	683	PANTHER	MIXED LINEAGE PROTEIN KINASE	11	682	-	-
	Pral736g00001	683	Pfam	Protein kinase domain	406	678	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral736g00001	683	FunFam	Serine/threonine-protein kinase TOUSLED	396	683	-	-
	Pral736g00001	683	Coils	Coil	356	390	-	-
	Pral736g00001	683	MobiDBLite	consensus disorder prediction	124	168	-	-
	Pral736g00001	683	ProSiteProfiles	Protein kinase domain profile.	405	678	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral736g00001	683	SMART	serkin_6	405	678	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral736g00001	683	MobiDBLite	consensus disorder prediction	147	168	-	-
	Pral736g00001	683	Gene3D	Transferase(Phosphotransferase) domain 1	396	683	-	-
	Pral736g00001	683	MobiDBLite	consensus disorder prediction	70	84	-	-
	Pral736g00001	683	CDD	STKc_TLK	404	677	-	-
	Pral736g00001	683	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pral736g00001	683	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	531	543	IPR008271	GO:0004672\|GO:0006468
	Pral736g00001	683	Coils	Coil	299	329	-	-
	Pral736g00001	683	ProSitePatterns	Protein kinases ATP-binding region signature.	411	434	IPR017441	GO:0005524
	Pral736g00001	683	SUPERFAMILY	Protein kinase-like (PK-like)	397	679	IPR011009	-
	Pral736g00001	683	MobiDBLite	consensus disorder prediction	43	84	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral736g00001	Pral-Chr736	3162	14134	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral736g00001	388	683	MAP Kinase Kinase Kinase	AT3G13530	28.094	4.49e-28	119

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Pral736g00001		Pkinase	8.8e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral736g00001	K08864		-	gmx:100805168	1129.39