Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral70g00023 ATGCATTATCAGCCCCATACTTTCCTCTCTTCTGATGAAGTACTCTTATCTCTGCCTCAACCATCACTTGCCCATTCTCTGTTTCCCAACTCTTCTGCTGACGCTGGCTGCACAACCGATCCTCTGGACTCGGTTTCAAATGTTCAGAAATTGATCGTCCATCAAGTTCGCCCCATAAGATATGGACCTGCTGTCGAAACTTCTCAAGGGACTTTCGACATACCCACAGTTTTTCACAGTTCGTGGTGGGACAGTTGGGTGCGTCAAATTAACCAAACCAAAACCAACAACCCGTTGCGATGTGAGGTTTGCAAAATTGATCTTAATAGCAAGAGTGTGTTTGAAGACCACATATCAGGGAAGACACACAAGAAGAGCATACAATTGCACAATAATCCGAACAACACTATATCATCTGGAACTGCTAATGTAACTTTTCAAATCCAAGAGAGTGGTGTCCAAGGACAAGAGCTGCTTGTTGATGCAGACAAGGATTTAAAGTCTAAGAAACAGAAGTTTTTGATCATGGGGGAAGCAGAGCTCGCTGATCAGGCTGTCAAAACTTCTCAAGGGACTTCCGACATGCTCACAATTTTTCATAATCTATGGAGGGACAATTGGGTGCGTCAAATTAACCAAACCAAAATCAACAAGCGAATGCGATGTGAGGTTTGCAAAATTGATCTTAATAGTAAGAGTGTGTTTGAAGACCACATATCAGGGAAGAAACACAAGAAGAACATGCAATTGCACACTAATCCAAGTAACACAGTGTCATCTGCTATCGCTAATATGAATTTTCAAATCCAAAATAGTGGTGTTCAAGGACAAGAGCCACTTTTTGATGCGGACAAGGATTTAAAGTCTAAGAAACGGAAGCTTTTGATCATGGGAGAAGCAGAGCTCGCTGATCAGCAGGCGATGGATCCAACAAATGAGCCATTGGAAAAGTTGGACACTAGTAAACAAGAGTTGATCAATTCACATAAACCAGAAATTGCATTCATGTTAGAAGCTCCAGAAAAGGACGTTGAAACAAAGAAACAGAAGTGTGAACTTGAATTCCCTTCTAGATGTGAAATTTGCTCGATCGATTGTAATAGTAAGAAAGTATATATCAGTCATTTATCAGGGAAGAAACACCAGAGGAACCTGGAGAAAGTGTCACAATCTGAAGATAACAGAGCCATTGCTAGTGTAGCCAGTGCTGCTGCAGCCACTATGACAGAAATTGATGTGCAACAAGCAACAAAACAAGCAATTGAGCCACAGGAAAAGCTGGAGACTAGTCCACAAGAAGGTATGGATACACATGAATCAGGAAACATAGTCATTTTTGAGGCTCCAGAAAAGGATACTGAGACAGAGAGACTTAGAATTGAACCTTTTGGTGGGGCTGCAATTACTTTTTCCATAGTGTGCGAACTATGCAACGCAGCATGCAACAGCGAGACGGTCTTTAATTCGCACCTCCATGGGAAGAAACATGCTGCTATGGCGAAGAAGCTGACAATGTCAAAGTAG 1524 0.4193 MHYQPHTFLSSDEVLLSLPQPSLAHSLFPNSSADAGCTTDPLDSVSNVQKLIVHQVRPIRYGPAVETSQGTFDIPTVFHSSWWDSWVRQINQTKTNNPLRCEVCKIDLNSKSVFEDHISGKTHKKSIQLHNNPNNTISSGTANVTFQIQESGVQGQELLVDADKDLKSKKQKFLIMGEAELADQAVKTSQGTSDMLTIFHNLWRDNWVRQINQTKINKRMRCEVCKIDLNSKSVFEDHISGKKHKKNMQLHTNPSNTVSSAIANMNFQIQNSGVQGQEPLFDADKDLKSKKRKLLIMGEAELADQQAMDPTNEPLEKLDTSKQELINSHKPEIAFMLEAPEKDVETKKQKCELEFPSRCEICSIDCNSKKVYISHLSGKKHQRNLEKVSQSEDNRAIASVASAAAATMTEIDVQQATKQAIEPQEKLETSPQEGMDTHESGNIVIFEAPEKDTETERLRIEPFGGAAITFSIVCELCNAACNSETVFNSHLHGKKHAAMAKKLTMSK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral70g00023 507 SUPERFAMILY beta-beta-alpha zinc fingers 472 504 IPR036236 -
Pral70g00023 507 SUPERFAMILY beta-beta-alpha zinc fingers 215 251 IPR036236 -
Pral70g00023 507 SUPERFAMILY beta-beta-alpha zinc fingers 93 130 IPR036236 -
Pral70g00023 507 SMART ZnF_U1_5 469 503 IPR003604 GO:0003676|GO:0008270
Pral70g00023 507 SMART ZnF_U1_5 96 130 IPR003604 GO:0003676|GO:0008270
Pral70g00023 507 SMART ZnF_U1_5 359 388 IPR003604 GO:0003676|GO:0008270
Pral70g00023 507 SMART ZnF_U1_5 217 251 IPR003604 GO:0003676|GO:0008270
Pral70g00023 507 Gene3D Classic Zinc Finger 465 503 - -
Pral70g00023 507 Gene3D Classic Zinc Finger 337 390 - -
Pral70g00023 507 Gene3D Classic Zinc Finger 206 252 - -
Pral70g00023 507 Gene3D Classic Zinc Finger 86 131 - -
Pral70g00023 507 PANTHER OS06G0651300 PROTEIN-RELATED 316 503 - -
Pral70g00023 507 SMART c2h2final6 99 123 IPR013087 -
Pral70g00023 507 SMART c2h2final6 472 496 IPR013087 -
Pral70g00023 507 SMART c2h2final6 220 244 IPR013087 -
Pral70g00023 507 SMART c2h2final6 357 381 IPR013087 -
Pral70g00023 507 Pfam Zinc-finger of C2H2 type 358 381 - -
Pral70g00023 507 Pfam Zinc-finger of C2H2 type 222 244 - -
Pral70g00023 507 Pfam Zinc-finger of C2H2 type 473 496 - -
Pral70g00023 507 Pfam Zinc-finger of C2H2 type 100 123 - -
Pral70g00023 507 SUPERFAMILY beta-beta-alpha zinc fingers 356 388 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral70g00023 Pral-Chr70 316168 321610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral70g00023 354 499 C2H2 Transcription Factor Family AT5G61190 28.743 4.19e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral70g00023 - - pcin:129315651 405.986