LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral70g00021	ATGGCGATGATACTTCCGACGTTGGTTTTTCTGGGATTCTTGTCGCTTCAGATTCATTTGATCTTCTCTTTCACTGATCCTCAAGATGTTGCAGTAGTAAGATCTTTAAAGGATATGTGGCAAAACACACCACCCAGTTGGGATAAATCAGATGATCCCTGTGGAGCCCCTTGGGAAGGAGTCACCTGCAACAGATCCAGAATCACTTCACTGGGATTGTCAACTATGGGCCTCGAAGGCAAACTGAGTGGAGACATTGGAGGTCTCACTGAGTTAAGATCCTTGGACTTGTCGTTTAACAGAGGTTTGAAGGGTCCTCTGTCTCCACAATTAGGAGACCTCAAAAATCTAAATATATTGATTTTGGCTGGTTGCAGCTTCAGCGGCAAAATTCCAAATGAATTGGGAAATCTCTCCGAACTTTCATTCTTGGCATTAAATTCAAACAACTTGTCTGGAGATATACCAACTTCATTGGGTAATCTTTCCAAATTATATTGGTTGGACTTGGCAGACAATCAATTAACAGGGCCAATTCCCGTGTCCACTCCCACATCTCCTGGATTAGACATGCTTTTAAAGGCCAAGCACTTCCATTTCAATAAGAACCAGCTATCAGGTCCCATTCCACCAAACCTTTTCCACTCTGAGATGGTACTCATTCATGTGTTATTTGATGGGAATCGTTTAACAGGCACAATTCCATCAACATTAGAATTAGTTCAAACACTTGAAGTTCTTCGGCTTGATAGAAATTTCTTTACTGGAGAAGTCCCGTCAAATCTCAACAACCTAACCAACCTCAATGAATTGAATTTGGCACATAATAAATTGACAGGTTCTTTACCAGATTTGTCTCAGATGGATACTCTCAATTACGTGGATCTGAGCAATAATTCTTTTGATCCTTCTCAACCCCCATTATGGTTCCAAACTTTACCATCACTTACCACTTTAATTATGGAGTTTGGATCACTCGACGGTCCTCTGCCATCAAAACTCTTCAGCAGTCCCCAAATACAACAAGTGAAATTAAAGCACAATACATTGAACAACACTTTGGACATGGGGGACAGCATTAGCCCTCAATTACAGCTTGTAGATTTGCAAGACAACCAGATTACTTCAGTAACACTCAGTTCTGGATACAAAAATACGTTGATTTTGATTGGAAATCCAGTGTGCCTTACAGCTCTCTCAAATACCAATTACTGTCAACTACAACAACGACCCAAAAAGCCTTACTCTACCAGCTTGGCTAATTGTGGAAGCAAATCATGTCCTACTGATCAGAAGTTAAGCCCGCAAAGTTGTGAATGTGCCTATCCATATGAAGGAATTTTATATTTCAGAGGACCCTTGTTTAGAGAATTATCAAATGCAAATACATTTCATTCTCTTGAGATGAGTTTGTGGGTGAAGTTAGGCCTCACTCCTGGTTCAGTATCATTACAAAACCCATTTTTCAATAGTGATGATTATCTTCAAGTGCAATTAGCACTCTTCCCACCAACAGGAACATACTTCAATAGGTCAGATATTCAGAGAATTGGATTTCGATTAAGTAATCAAACTTACAAGCCACCACCAGAGCTTGGACCATATTACTTCATTGCATTTCCTTATGCTTTCCCAGTTCAAACTGCTTCAGAAACTCGTGGAGCGGCTTCTCTAAGCAAGCCTGTTGTCATTGGGATAGCAATTGGTTGCTCATTTCTGGTATTGAGCCTCGTAGGGCTAGGGATATATGCCATTATACAAAAGAAGCGTGCAGAGCAAGCCATTGTGCTAAGCAGGCCTTTTGCGTCATGGACACCTAGTGGGAAGGATAGTGGAGGAGCTCCACAACTAAAAGGAGCGAGATGGTTTTCTTATGATGAACTCAAAAAGTGCACATCAAATTTCTCCCATAACAATGAGTTAGGATTTGGAGGTTATGGCAAGGTGTACAAAGGGGTGCTTCCTGATGGACAAATGGTTGCAATAAAGCGAGCCCAACAAGGATCAATGCAAGGAGGACTTGAGTTCAAGACTGAAATTGAATTGCTTTCACGAGTTCATCACAAGAATCTTGTTGCCCTTGTAGGCTTCTGCTTTGAACAGGGAGAGCAAATGTTAGTTTATGAATATATGCCTAATGGAACACTCAGGGATTGTTTATCAGGTAGATGTGGAATTTATCTAGACTGGAAGAGGAGGTTAAGAGTTGCTCTCGGATCAGCAAGGGGACTTGCTTATTTACATGAACTTGCTAACCCTCCAATAATTCATAGAGATGTCAAGTCCTCTAATATCTTGCTAGATGAGAATTTGACAGCAAAAGTTGCAGATTTTGGCTTGTCAAAGTTAGCATCAGATAGTGGAAAAGGCCATGTTTCTACTCAGGTTAAAGGCACATTGGGGTATCTTGATCCTGAATATTACATGACACAGCAATTGACCGAAAAGAGTGATGTGTATAGTTTTGGGGTTGTGATGCTCGAACTTATAACTGCGAGACAACCTATCGAGAAAGGAAAGTACGTTGTGCGTGAAGTGAGGTCATTGATAAATAAGAATGAACAAGAGTATTGTGGTTTAAGGGACATGATGGATCCAGTGGTTATAGAAACTTGTAATCTTGGGGGGTTTCGTACGTTCTTGGATCTCACAATGCAATGTGTTGAGGAATCAGCTTCTGATCGTCCAACAATGAGTGAAGTTGTGAAAGCTCTTGAAATCATTCTACAAAATGATGGCTTGAACACAAACTCAACTTCTGCTTCCTCTTCTGCAACAGACTTTGCACTTTCTAAGACTTCTCTCACACATCCATACATGGATACTTTCAGCAGAAAGGACATTAATGAGACCAATAGTGCATTTGACTATAGTGGCGGCTATACACTTCCTGCAAAAATCGAGCCGAAATAG	2913	0.4075	MAMILPTLVFLGFLSLQIHLIFSFTDPQDVAVVRSLKDMWQNTPPSWDKSDDPCGAPWEGVTCNRSRITSLGLSTMGLEGKLSGDIGGLTELRSLDLSFNRGLKGPLSPQLGDLKNLNILILAGCSFSGKIPNELGNLSELSFLALNSNNLSGDIPTSLGNLSKLYWLDLADNQLTGPIPVSTPTSPGLDMLLKAKHFHFNKNQLSGPIPPNLFHSEMVLIHVLFDGNRLTGTIPSTLELVQTLEVLRLDRNFFTGEVPSNLNNLTNLNELNLAHNKLTGSLPDLSQMDTLNYVDLSNNSFDPSQPPLWFQTLPSLTTLIMEFGSLDGPLPSKLFSSPQIQQVKLKHNTLNNTLDMGDSISPQLQLVDLQDNQITSVTLSSGYKNTLILIGNPVCLTALSNTNYCQLQQRPKKPYSTSLANCGSKSCPTDQKLSPQSCECAYPYEGILYFRGPLFRELSNANTFHSLEMSLWVKLGLTPGSVSLQNPFFNSDDYLQVQLALFPPTGTYFNRSDIQRIGFRLSNQTYKPPPELGPYYFIAFPYAFPVQTASETRGAASLSKPVVIGIAIGCSFLVLSLVGLGIYAIIQKKRAEQAIVLSRPFASWTPSGKDSGGAPQLKGARWFSYDELKKCTSNFSHNNELGFGGYGKVYKGVLPDGQMVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVALVGFCFEQGEQMLVYEYMPNGTLRDCLSGRCGIYLDWKRRLRVALGSARGLAYLHELANPPIIHRDVKSSNILLDENLTAKVADFGLSKLASDSGKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITARQPIEKGKYVVREVRSLINKNEQEYCGLRDMMDPVVIETCNLGGFRTFLDLTMQCVEESASDRPTMSEVVKALEIILQNDGLNTNSTSASSSATDFALSKTSLTHPYMDTFSRKDINETNSAFDYSGGYTLPAKIEPK	970

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral70g00021	970	CDD	STKc_IRAK	641	908	-	-
	Pral70g00021	970	ProSiteProfiles	Leucine-rich repeat profile.	267	289	IPR001611	GO:0005515
	Pral70g00021	970	Gene3D	Phosphorylase Kinase; domain 1	609	710	-	-
	Pral70g00021	970	Pfam	Protein tyrosine and serine/threonine kinase	638	905	IPR001245	GO:0004672\|GO:0006468
	Pral70g00021	970	FunFam	Leucine-rich repeat family protein	28	184	-	-
	Pral70g00021	970	SUPERFAMILY	Protein kinase-like (PK-like)	620	931	IPR011009	-
	Pral70g00021	970	SUPERFAMILY	L domain-like	46	405	-	-
	Pral70g00021	970	PANTHER	RECEPTOR-LIKE PROTEIN 55	34	909	-	-
	Pral70g00021	970	Gene3D	Transferase(Phosphotransferase) domain 1	711	930	-	-
	Pral70g00021	970	Gene3D	Ribonuclease Inhibitor	30	184	IPR032675	-
	Pral70g00021	970	FunFam	Leucine-rich repeat protein kinase family protein	603	710	-	-
	Pral70g00021	970	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	711	921	-	-
	Pral70g00021	970	SMART	serkin_6	635	908	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral70g00021	970	FunFam	Predicted protein	187	408	-	-
	Pral70g00021	970	ProSiteProfiles	Protein kinase domain profile.	635	909	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral70g00021	970	Gene3D	Ribonuclease Inhibitor	185	409	IPR032675	-
	Pral70g00021	970	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	755	767	IPR008271	GO:0004672\|GO:0006468
	Pral70g00021	970	ProSitePatterns	Protein kinases ATP-binding region signature.	641	663	IPR017441	GO:0005524
	Pral70g00021	970	Pfam	Leucine rich repeat N-terminal domain	28	64	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral70g00021	Pral-Chr70	304810	312214	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral70g00021	20	970	Receptor kinase-like Gene Family	AT1G79620	72.171	0.0	1431

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Pral70g00021		PK_Tyr_Ser-Thr	6.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral70g00021	-		-	gmx:100792249	1563.13