Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral688g00002 ATGTCGTCGGAGAATCAGCCGGACGATGCCGTGAAGCTCAACTTCAAGGACACCGAGCTCACCTTGGGCCTTCCCGGTGCCAAAACCGGTTCCAAACGTGGATTCTCTGACACCGTTGATCTTAATCTGGCCACAACCCAAGCCACCGATAACGACCATGGCTCCGCATCTGCTAAACCTCCCGCACAAAAGGAGCAGATGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGAAAGAGCGTGATGAAGAAATGTAAGTACGTGAAGGTGGCCGTGGATGGAGCTCCATATCTCAGAAAAGTAGATCTTGAAATGTATCAGAGTTATGAGGAACTTCTAAGGTCCTTGGAAACTATGTTCAGCTGCCTAACCATCCGCAATGATTTGAACCAGAACTCTGAGAGGACGACGAAGGTTAAGGCGGAGAGTGGAAAGAATAATAATGGAGGCGAATACTTACCCGCCTATGAGGACAAAGATGGTGACTGGATGATGGTCGGAGATGTCCCATGGAAGATGTTTGTTGAGTCCTGCAAAAGAATAAGGCTGATGATGAGCTCGGAGGCCACGGGCTTAGGTCCGAGAAGAGGTTCAAAATGA 597 0.5042 MSSENQPDDAVKLNFKDTELTLGLPGAKTGSKRGFSDTVDLNLATTQATDNDHGSASAKPPAQKEQMVGWPPVRASRKSVMKKCKYVKVAVDGAPYLRKVDLEMYQSYEELLRSLETMFSCLTIRNDLNQNSERTTKVKAESGKNNNGGEYLPAYEDKDGDWMMVGDVPWKMFVESCKRIRLMMSSEATGLGPRRGSK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral688g00002 198 Gene3D - 79 197 - -
Pral688g00002 198 ProSiteProfiles PB1 domain profile. 84 189 IPR000270 GO:0005515
Pral688g00002 198 Pfam AUX/IAA family 81 194 IPR033389 -
Pral688g00002 198 SUPERFAMILY CAD & PB1 domains 76 183 - -
Pral688g00002 198 MobiDBLite consensus disorder prediction 44 70 - -
Pral688g00002 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 189 IPR003311 GO:0005634|GO:0006355
Pral688g00002 198 FunFam Auxin-responsive protein 79 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral688g00002 Pral-Chr688 18810 20267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral688g00002 76 194 B3 DNA Binding Superfamily AT1G59750 27.731 1.18e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral688g00002 AUX_IAA 4.9e-48 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral688g00002 K14484 - pop:7490981 245.743