Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral670g00016 ATGTCTTCTTTACCGAGGAACAGGGGATCTGAGTTTTCATGCATGATAAAAGAGGCTCGCATCTTGGGAATGGCCCTCGGCATTCCTTGTTTGAATGGGATTGAAGAAGGTGAAGCTCAATGTGCTTTGTTGAACTCCGAATTATTGTGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGGGGGTATGTTGTTTGCTATGAGATGGAAGACATTGAAAGAAAACTTGGATTTGGAAGGGATTCATTGATTGCTCTTGCCTTACTTCTTGGGAGTGATTATAATCAAGGAGTCTATGGTCTAGGTCCGGAGTCAGCTTGTCAGATAGTTAGATCTATTGGTGACAAACATGTGCTCCAAAAATTTGCTTCTGAAGGAATTGAATGTCTGAAAAGACTGAAAGGTGCAAAGAAGCAGGGACAAGTCTTGAAGGACAACAACAAAGAAAATATGTTGGACCATGATATGGCATTGAGTCATGGAGGCGGGAACAATTCGCAGAGAGATTATAACTTCTTGCAAGTTATCAATGCTTATGTAAAGCCGAAATGCCACCCTGTGGATTCTGATATTGTGATGAGGGTTCTTGCTCAGTATCCATTTCAACGTAGTAAACTCCAGCAGATATGTGCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAGTATGTCCTTCCAAAGATAGCTGAAAGGGATTTACGGCGATTTGCCAATATGCGCTTAACGTCATCAGAAGTAGGACTGAATCTTCCTTTGAATGAGATCCCTGTAAAGTGTCCGGTCTCGGAAATCATTAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTACGAGGTGTCATGGAATGAAATGGATGGACTTGGAACTTCAATAATACCGGCAGATCTTTTAAAAAGTGCTTGTCCTGAGAAGATTTTGGAGTTTGACGAGAAAAAAGGTCTGCTCAAGAAACAAAATGCTCAAAAAAGAAGACCAAAGAAAACTGAAACTGCATCTTCTATGGCTGAACTTGACCTGCAACTTACGAATCTATCACTGAATATCGAGCTGGGAGACCACGCCAATCACAATGCCTCCGATTCATCAGAACAGGTCTTTCAAGATGCATCTGCCGTGGATGAAGCTTATCTGAATAACAGAGACTTGTCAAGTTCATTACTTGATGAACAGATCGAATGGAATCAAAATGTG 1239 0.4132 MSSLPRNRGSEFSCMIKEARILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMEDIERKLGFGRDSLIALALLLGSDYNQGVYGLGPESACQIVRSIGDKHVLQKFASEGIECLKRLKGAKKQGQVLKDNNKENMLDHDMALSHGGGNNSQRDYNFLQVINAYVKPKCHPVDSDIVMRVLAQYPFQRSKLQQICAEFFQWPPEKTDEYVLPKIAERDLRRFANMRLTSSEVGLNLPLNEIPVKCPVSEIIKCRKVQGRECYEVSWNEMDGLGTSIIPADLLKSACPEKILEFDEKKGLLKKQNAQKRRPKKTETASSMAELDLQLTNLSLNIELGDHANHNASDSSEQVFQDASAVDEAYLNNRDLSSSLLDEQIEWNQNV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral670g00016 413 CDD H3TH_XPG-like 97 140 - -
Pral670g00016 413 Gene3D - 4 93 - -
Pral670g00016 413 Pfam XPG I-region 27 109 IPR006086 GO:0004518
Pral670g00016 413 SMART xpgineu 24 94 IPR006086 GO:0004518
Pral670g00016 413 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 94 255 IPR036279 -
Pral670g00016 413 SUPERFAMILY Chromo domain-like 277 329 IPR016197 -
Pral670g00016 413 Gene3D - 95 155 - -
Pral670g00016 413 SMART HhH_4 96 129 IPR008918 GO:0003677|GO:0003824
Pral670g00016 413 FunFam Flap endonuclease GEN-like 1 94 152 - -
Pral670g00016 413 SUPERFAMILY PIN domain-like 6 109 IPR029060 -
Pral670g00016 413 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 44 64 IPR006084 -
Pral670g00016 413 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 23 40 IPR006084 -
Pral670g00016 413 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 99 114 IPR006084 -
Pral670g00016 413 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 6 378 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral670g00016 Pral-Chr670 64416 69417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral670g00016 26 130 Core DNA Replication Machinery Family AT5G26680 30.841 9.80e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral670g00016 K15338 - qsa:O6P43_008236 583.948