Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral670g00009 ATGTACGTCTCTGGCTCCGTCGTTCCTCACTCAGCTACTTCACCTTCGCCGTTGCCGCCGCCGATGCCTCCTGGTGGCGTCGACTTCGCTATTTTTGTCAAGGCCACAGCCGCCGTATGCGCTGTCATATTCGTCACTGTCTTTTCGGTCTACCTCAATTACTGGACCGCGCTAATGTTCGCCAGCCAGAACCATACGGCCGGTGGCCTCGACGGCGTCAGTTGGCGGTGTTCTTGCTCTCGAGGAATCGACCGGGAAGTCCTGGATACATTCCCGATCCTCGTGTATTCTACCATAAAAAACCACATGATCGGAAAAGGAGAGCTCGAATGCGCAGTGTGCTTGAGCGAGTTCGAAGACCACGAGACTCTCCGGTTGATACCAAACTGCAACCACGTGTTTCACCCGGAGTGTATCGACGCCTGGTTAGCTTCTCATGTGACTTGTCCCCTTTGTCGAGCAAATCTGAAACCAGATTCCGGCGACGTATCCATCGTAATGCCGACTGATCAGTTAAACGAAGGAAGTGAAGACAGTAGCAGGAGAGGAGTGAGGGAGACACGGCAAGCGCAGGCGCCTAACGATGTCGGTCCGAGCAGTAGCAACTCTTCAGGAACAGAGAGAGCAAACCACATGGACGAGGCCAGAGCTAAGCAAAGTAGAAATCGAAGATCGAGATGGAGAATGTTCGAGAAGCTACCGAGATCCAACTCCACGGGACATTCGCTGCTCGAACAGCCTCTGGCGACGTCGAACGACACGGAGAGGTATACGCTTAGGTTGCCGGAGGAGCTTCGGAGGTATATTCTGATGAATCATGCGGCCATCGGGCGGTCGGTGAGCTACCATGGGGTGACGCGGCCGATGAAAGGGATGGGTTGGAGTGACAGCGATGGAAGCAGCAGAGGGAAGAGGGACACGACGACGCCTCCAAGTGTTCATCGCAAGGATTAA 954 0.5461 MYVSGSVVPHSATSPSPLPPPMPPGGVDFAIFVKATAAVCAVIFVTVFSVYLNYWTALMFASQNHTAGGLDGVSWRCSCSRGIDREVLDTFPILVYSTIKNHMIGKGELECAVCLSEFEDHETLRLIPNCNHVFHPECIDAWLASHVTCPLCRANLKPDSGDVSIVMPTDQLNEGSEDSSRRGVRETRQAQAPNDVGPSSSNSSGTERANHMDEARAKQSRNRRSRWRMFEKLPRSNSTGHSLLEQPLATSNDTERYTLRLPEELRRYILMNHAAIGRSVSYHGVTRPMKGMGWSDSDGSSRGKRDTTTPPSVHRKD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral670g00009 317 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Pral670g00009 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 237 - -
Pral670g00009 317 Pfam Ring finger domain 110 153 IPR001841 -
Pral670g00009 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 161 IPR013083 -
Pral670g00009 317 MobiDBLite consensus disorder prediction 289 317 - -
Pral670g00009 317 MobiDBLite consensus disorder prediction 299 317 - -
Pral670g00009 317 CDD RING-H2_EL5-like 110 153 - -
Pral670g00009 317 MobiDBLite consensus disorder prediction 192 208 - -
Pral670g00009 317 MobiDBLite consensus disorder prediction 164 249 - -
Pral670g00009 317 MobiDBLite consensus disorder prediction 209 231 - -
Pral670g00009 317 FunFam E3 ubiquitin-protein ligase ATL6 73 159 - -
Pral670g00009 317 MobiDBLite consensus disorder prediction 235 249 - -
Pral670g00009 317 SMART ring_2 111 152 IPR001841 -
Pral670g00009 317 SUPERFAMILY RING/U-box 102 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral670g00009 Pral-Chr670 30810 32856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral670g00009 1 272 Rapid Response to Elicitors AT3G05200 36.029 4.18e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral670g00009 K10664 - cave:132171153 192.2