Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral660g00003 ATGATTTGTTTTCCTGGATTCTTTGGTAGAAAGTCGCGTTCTTCAGCAAGGCTAGATCCAGACATTGAAGAAGAATTTTCTGCTCTTCACAATGTCAGACTCTATACATACAAAGCACTACGAATTGCCACTGAGGATTTCAGTCCTATTAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTTTTCAAGGGACGGTTAAAAGGTGGAAGAGTTGCCGCAATTAAAGTTCTTTCAGCTGAATCAAAACAAGGGGTGAGGGAATTCTTGACTGAGATTAAGGTGATCTCAGAAATAGAGCATGAAAATTTAGTTAAGCTATATGGCTGTTGTGTGGAAGGAAATCACAGAATATTAGTCTACAATTACCTGGAGAATAACAGCCTCGCGCAAACGCTAATAGGTGCACGGCGTAGCAGTATCCAATTCAATTGGCGAACGCGGTCTAGAATATGCGTGGGGGTTGCACGTGGGATTGCCTTTCTCCATGAGGAAGTAAGACCGCATATTGTCCATAGGGACATAAAAGCAAGCAACATTCTTCTTGACAGAGACCTCACACCCAAGATTTCAGATTTTGGGCTTGCAAAACTGATTCCAGCAAACATGACCCATGTTAGCACACGTGTTGCAGGAACTATAGGTTACCTGGCACCAGAGTATGCAATAGGAGGCAAGCTGACACGAAAAGCTGATGTATACAGCTTTGGAGTCCTACTTGTGGAGATTGTAAGTGGGAGATGTAACACAAATACACAGTTACCAATGGAAGAACAGTACCTTCTAGAAAGGACGTGGGATCTTTATGAGCGAAAGGAATTAGTAGCACTGGTAGATGAATCGCTGAATGGGGAGTTTGATGCTGAGGAAGCTTGCAGATTTCTGAAGATTGGGCTTCTTTGCACGCAGGATGATCCCAAGGTGCGGCCATCCATGTCTTCGGTGGCAAGCATGCTCACCGGCAGAATGCGTGTGGACGAGAGGATAGCAAAACCAGCCTTGATCTCTGATTTTATGGACCTCAAAGTGAGGAAAAAACCAGCAAGTCATATTGGCATAGAGATTACTGAGGCTTCATCTTCAAACTATTCATCCTCGGCCTTGTGCAGCCAGGATACCACTTTTTCATCAACTGTTTCAACCGCTGCAACTACAACCTTTGTGCCTCGATATGATCAAAGCATGTGA 1185 0.4388 MICFPGFFGRKSRSSARLDPDIEEEFSALHNVRLYTYKALRIATEDFSPINKIGEGGFGSVFKGRLKGGRVAAIKVLSAESKQGVREFLTEIKVISEIEHENLVKLYGCCVEGNHRILVYNYLENNSLAQTLIGARRSSIQFNWRTRSRICVGVARGIAFLHEEVRPHIVHRDIKASNILLDRDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNTQLPMEEQYLLERTWDLYERKELVALVDESLNGEFDAEEACRFLKIGLLCTQDDPKVRPSMSSVASMLTGRMRVDERXIAKPALISDFMDLKVRKKPASHIGIEITEASSSNYSSSALCSQDTTFSSTVSTAATTTFVPRYDQSM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral660g00003 395 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral660g00003 395 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Pral660g00003 395 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 354 - -
Pral660g00003 395 FunFam cold-responsive protein kinase 1 123 334 - -
Pral660g00003 395 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Pral660g00003 395 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Pral660g00003 395 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral660g00003 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pral660g00003 395 Pfam Protein tyrosine and serine/threonine kinase 51 317 IPR001245 GO:0004672|GO:0006468
Pral660g00003 395 FunFam cold-responsive protein kinase 1 18 122 - -
Pral660g00003 395 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Pral660g00003 395 CDD STKc_IRAK 53 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral660g00003 Pral-Chr660 24976 29699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral660g00003 35 333 Receptor kinase-like Gene Family AT1G53430 56.187 4.29e-111 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral660g00003 PK_Tyr_Ser-Thr 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral660g00003 - - aew:130771828 578.556