Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral659g00008 ATGCAGAAAAGGAAAATGGATGCGCATGTTGAGATGGGTCTTCTTGGGGAAAACTTCGATCCGAGTTTGATTGCGAGGATTAGGGATGATGGGTATGAGAGTCGTTCTGGAAGTGATAATTTCGATGGCGTATCAGGCGAGGATGATCAGGATGCTGCAGACGATACACCTCAGAGATCGAAGAAGTACCATAGACACACCCCTCACCAAATTCAAGAACTTGAAAATTTCTTCAAGGAGTGTCCTCATCCTGACGAGAAGCAAAGACTGGAACTTAGTAGGAGGCTTGGCTTGGAGACTAAGCAAGTTAAATTCTGGTTTCAAAATCGACGAACCCAAATGAAGACGCAACTGGAGCGTCATGAGAATCATTTTCTGAGGCAAGAAAATGACAAGCTCCGAGCTGAGAACAGTATGATGAAGGAAGCCATGTCCAACCCGGTATGCAACAACTGCGGAAGCCCAGCCATTCCTGGGCAAATCTCATTCGAAGAACACCAACTAAGGATTGAAAATGCTCGATTGAAGGACGAACTGAACCGCATATGTGCCTTGGCTAACAAGTTTCTGGGAAGGCCAATCTCAACCATGGCTCTTGCAACCCCAAATTCTGGTCTTGAGCTAGCCATTGGAAGGAGTAATAATACTATGAGCGGGATTGGTCTTGGGTCAAGCTTTCCGGTGGGATTTGATATGGGGATGACAATGCAAATGGGAAATGATCAAGCACAGGTTGAGAGATCCATGCTTATAGACCTTGCCTTGGCTGCTATGGAGGAATTGATGAAGATGGCTCAAGGGGACGCCCCTCTTTGGATTAAGACATTGGATGGCGGTAATGAAGTCCTGAATCTAGAGGAGTATGCTCGGATTTTTCCTCCTTGTCTTGGCCCGAAACCTCCTGGTTATGTCACTGAAGCTACTAGAGGCACTGGAGTAGTGACGATCAACAGTTTGGCTCTTGTTGAAACATTGATGGACATGAATCGATGGGTGGAGATGTTTCCGACCATGATTGCTAGAGCTTTGCCGCTCGATGTGATATCAAATGGCGTGGGAGGGACCAGAAGCAGTACTTTGCTCTTGTTGGAAGCTGAGCTGCAAATGCTTTCGCCGTTGGTGCCCGTTCGGCAGACGAGATTGCTGCGATTTTGCAAGCAGCAAACAGAAAATCTATGGGCTGTGGTTGATGTTTCAGTCGAGATTGGTCGTGACCCCACCAATGCACACCCTTTCGTCGCATGCAGGAGGCTTCCTTCTGGCTGCCTTGTGCAAGATATGCCCAACGGTTACTCCAAGGTTACTTGGGTAGAGCATTGGCAGTACGATGAGAATGTGGTGCACCATCTTTACCGTCCGATGGTGAACGCCGGCATTGGCTTCGGTGCTCCTAGATGGATCGCCGCCCTCCAAAGGCAATGCGAATGCTTGGCCATCCTCTTGTCCTCTTCCCTTCCTATTGATGATCACGCTACACTGAGCCAAGGTGGGCGGCGGAGTATGGTGAAGCTGGCACAACGTATGACGGACAACTTCTGTTCTGGGATAATCGCTTCCTCTGGCCTCAGGTGGGACAGCCTCCGTGTGGAGACGCTGGGAGATGACGTTAAGGTTATGACCCGCAAGAGCGAAGGCGAACCAGGCGATCCTCCCGGAGTCATGCTCAGCGCCGCCACTTCCATCTGGCTGCCGCTGTCGCAGCAGAGTTTGTTCGACTTCCTCCGGGATCAACGCCGGAGATTCGAGTGGGACATCTTGTCCAACGGCGCCGGTACCATGCAGGAAGTGGCTCTCATTGCGAAGGGACAGACACATGGTAACTGTGTTTCTCTACTACGGACCAACGGTGCTAATGGGAACGAGACCAGCATGGTGATGCTGCAAGAGACATGGACGGATGCTACAGGGTCTATGGTGGTTTATGCACCAGTTGATGTGCAGTCGCTGAACGTGGTGATGAGCGGCGGCGATTCTTCGTACGTGGCTCTCTTGCCTTCTGGCTTCGCCATTCATCCCGACGTCAGCCGCAACGGGAGTCCTCCGGGCGGTGACGGTGGCAGTGGCGGAAGCTTGCTTACGGTAGGGTTACAGATACTGGTGAACAGCCTGCCAACAGGGAAGCTGACGGTGGAGTCCATTGAAACGGTGAACAATCTAATGACGGCCACAGTTCAGAAGATCAAAGAGGCGCTCAGAGTTGCATGA 2205 0.5107 MQKRKMDAHVEMGLLGENFDPSLIARIRDDGYESRSGSDNFDGVSGEDDQDAADDTPQRSKKYHRHTPHQIQELENFFKECPHPDEKQRLELSRRLGLETKQVKFWFQNRRTQMKTQLERHENHFLRQENDKLRAENSMMKEAMSNPVCNNCGSPAIPGQISFEEHQLRIENARLKDELNRICALANKFLGRPISTMALATPNSGLELAIGRSNNTMSGIGLGSSFPVGFDMGMTMQMGNDQAQVERSMLIDLALAAMEELMKMAQGDAPLWIKTLDGGNEVLNLEEYARIFPPCLGPKPPGYVTEATRGTGVVTINSLALVETLMDMNRWVEMFPTMIARALPLDVISNGVGGTRSSTLLLLEAELQMLSPLVPVRQTRLLRFCKQQTENLWAVVDVSVEIGRDPTNAHPFVACRRLPSGCLVQDMPNGYSKVTWVEHWQYDENVVHHLYRPMVNAGIGFGAPRWIAALQRQCECLAILLSSSLPIDDHATLSQGGRRSMVKLAQRMTDNFCSGIIASSGLRWDSLRVETLGDDVKVMTRKSEGEPGDPPGVMLSAATSIWLPLSQQSLFDFLRDQRRRFEWDILSNGAGTMQEVALIAKGQTHGNCVSLLRTNGANGNETSMVMLQETWTDATGSMVVYAPVDVQSLNVVMSGGDSSYVALLPSGFAIHPDVSRNGSPPGGDGGSGGSLLTVGLQILVNSLPTGKLTVESIETVNNLMTATVQKIKEALRVA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral659g00008 734 CDD START_ArGLABRA2_like 247 475 - -
Pral659g00008 734 Gene3D - 253 476 IPR023393 -
Pral659g00008 734 Pfam START domain 253 476 IPR002913 GO:0008289
Pral659g00008 734 MobiDBLite consensus disorder prediction 52 67 - -
Pral659g00008 734 Coils Coil 733 734 - -
Pral659g00008 734 SMART START_1 252 476 IPR002913 GO:0008289
Pral659g00008 734 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Pral659g00008 734 Gene3D - 46 133 - -
Pral659g00008 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 58 731 IPR042160 -
Pral659g00008 734 SMART HOX_1 59 121 IPR001356 GO:0003677
Pral659g00008 734 FunFam Homeobox-leucine zipper protein HDG1 46 133 - -
Pral659g00008 734 CDD homeodomain 61 117 IPR001356 GO:0003677
Pral659g00008 734 MobiDBLite consensus disorder prediction 30 67 - -
Pral659g00008 734 Coils Coil 123 146 - -
Pral659g00008 734 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Pral659g00008 734 SUPERFAMILY Bet v1-like 497 723 - -
Pral659g00008 734 SUPERFAMILY Bet v1-like 246 476 - -
Pral659g00008 734 Pfam Homeodomain 61 115 IPR001356 GO:0003677
Pral659g00008 734 ProSiteProfiles START domain profile. 243 479 IPR002913 GO:0008289
Pral659g00008 734 SUPERFAMILY Homeodomain-like 42 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral659g00008 Pral-Chr659 54491 59783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral659g00008 28 731 Homeobox Transcription Factor Family AT3G61150 57.162 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral659g00008 START 6.7e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral659g00008 K09338 - gmx:100785102 1060.44