Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral653g00008 ATGGCGGGAGCTACGGGCAGAGCCCTTATCACTCTCTCTCTAAACTCCAACCTTTCACCCTTCGTACGCTTATCTCATGGCCACACCATTCCATTTCTCAATCTGTCTGCAAGACGCTGCAGGGTTTTGCTAGGGTTTAGACACCTCTGTTCTGTCACCTCCACCGCTACGGCCACCGTTTCCGACACGACGGAGTCCATTGATCCTGACCAAATCAAGCACTCAATTCTTCTTGAGAGACTCAGATTCAGGAACCTTAAGGACTCCACTAAAACCCCAGAAATTAAGAATTCAACGAGGTCAGTTTCTGTCTCTGAAAAGGGTCGTGAGAATGAGGGGAAGAAGTCAGAGAAGAAGAAGTTTGTAGGAAGTTTTGAGGAGTTGGGCCTCAGCGATGAGGTAATGGGAGCCGTGAAGGAGATGAATATTGAGGTTCCCACGGAGATTCAGTGTATCGGCATCCCTGCTGTCTTGGAAGAGAAGAGTGTCGTTTTGGGATCTCATACTGGTTCTGGCAAGACTCTTGCTTACATGCTTCCCCTTGTTCAGTTGCTTAGACGGGATGAACAATTGAATGGATTGCTTATGAAGCCCAGGCGTCCCCGAGCTGTTGTGCTATGCCCTACGAGGGAGTTGTCTGAGCAGGTATTTCGAGTTGCAAAATCTATCAGCCACCATGCAAGAATAAGGTCTACTATGGTAAGTGGGGGTGGCCGTCTCAGGCCTCAGGAGGATTCATTAAATAACCCCATTGACCTGGTTGTTGGTACTCCGGGTAGAATTCTGCAGCATATTGAGGAAGGCAATATGGTATACGGTGATATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGAGGTTTTGGTCCTGATATTCGCAAGTTTATTGGCCCGCTAAAGCATCGTTCATTAAAACCTGATGGCCTAGGTTTTCAGACTATCCTGGTTACTGCTACCATGACAAAGGCAGTGCAAAAGCTTGTTGATGAGGAATTTCAGGGCATTGTGCATCTACGAACATCAACACTACATAAAAAGATTGCTTCTGCTCGTCATGATTTTATTAAGCTGTCGGGTTCTGAAAACAAGCTGGAGGCATTACTGCAGGTTCTGGAGCCAAGCCTGGCAAAGGGGAATAGAGTGATGGTTTTCTGCAATACATTGGATTCTAGCCGTGCAGTGGATCATTTTCTCAGTGAAAATCAGATAGCTACTGTCAATTACCATGGAGAGGTACCAGCAGAGCAAAGGGTTGAAAACCTCAAGAAGTTTAAAAATGATGAAGATGATTGCCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGTCTGGATTTGGATGTCGATCATGTTATCATGTTTGATTTCCCCTTGAACTCTATTGATTACCTTCACCGCACTGGTAGGACAGCTCGTATGGGTGCAAAAGGGAAGGTAACTAGCTTGGTTGCAAAAAGAGACTTAACCTTGGCCACTCGAATAGAAGAAGCAATAAGGAAGAATGAGAGCTTGGAGGCTATCAGTAAAGAAAGTGTTAGGAGGGAGATTGCTAGGACCCAAATAACTCAGCAGAAGGGGAAGAATAACAAATTGGTAAAGGTTTCCAAAGGGAAAAGCACTTCTACTGTCCGTGCCACTTCCAAAAAAGCATTGAAGAAGCCCACTGTATCAAAAGTATTAAAAAGTTCTTCTAGTGTTAACACTGGTTCGAGAAAAGTATCCAAACCATTAAAATCAGCAAAGGCAGGAGGGATTCAGGTTAAAAAATCTGTAAGATCTTCCAATGCAAGTAGCCTGAGAAAAGCTTCAGCAGGGAAAAAGCAAACAATTAAAAGAAAGAGTGCTGGCAAATCAACAAATTCTAAACTGAGTGTTGTTGGTTTTAGGGGGCGGAGTTCCTCAAACAAGAGGGAATCACAATTTTGA 1935 0.4444 MAGATGRALITLSLNSNLSPFVRLSHGHTIPFLNLSARRCRVLLGFRHLCSVTSTATATVSDTTESIDPDQIKHSILLERLRFRNLKDSTKTPEIKNSTRSVSVSEKGRENEGKKSEKKKFVGSFEELGLSDEVMGAVKEMNIEVPTEIQCIGIPAVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEQLNGLLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARIRSTMVSGGGRLRPQEDSLNNPIDLVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKHRSLKPDGLGFQTILVTATMTKAVQKLVDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQIATVNYHGEVPAEQRVENLKKFKNDEDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKRDLTLATRIEEAIRKNESLEAISKESVRREIARTQITQQKGKNNKLVKVSKGKSTSTVRATSKKALKKPTVSKVLKSSSSVNTGSRKVSKPLKSAKAGGIQVKKSVRSSNASSLRKASAGKKQTIKRKSAGKSTNSKLSVVGFRGRSSSNKRESQF 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral653g00008 644 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 65 513 - -
Pral653g00008 644 CDD DEADc 134 333 - -
Pral653g00008 644 MobiDBLite consensus disorder prediction 103 118 - -
Pral653g00008 644 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 519 IPR001650 -
Pral653g00008 644 MobiDBLite consensus disorder prediction 617 644 - -
Pral653g00008 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 496 IPR027417 -
Pral653g00008 644 Gene3D - 86 342 IPR027417 -
Pral653g00008 644 MobiDBLite consensus disorder prediction 560 577 - -
Pral653g00008 644 MobiDBLite consensus disorder prediction 591 607 - -
Pral653g00008 644 CDD SF2_C_DEAD 354 486 - -
Pral653g00008 644 MobiDBLite consensus disorder prediction 525 644 - -
Pral653g00008 644 Gene3D - 351 612 IPR027417 -
Pral653g00008 644 MobiDBLite consensus disorder prediction 89 118 - -
Pral653g00008 644 Pfam DEAD/DEAH box helicase 147 330 IPR011545 GO:0003676|GO:0005524
Pral653g00008 644 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Pral653g00008 644 SMART ultradead3 142 361 IPR014001 -
Pral653g00008 644 MobiDBLite consensus disorder prediction 525 551 - -
Pral653g00008 644 Pfam Helicase conserved C-terminal domain 366 477 IPR001650 -
Pral653g00008 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 341 IPR014001 -
Pral653g00008 644 SMART helicmild6 395 477 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral653g00008 Pral-Chr653 100203 105019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral653g00008 122 499 Eukaryotic Initiation Factors Gene Family AT3G19760 28.460 1.42e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral653g00008 - - pcin:129297913 1088.94