Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral650g00002 ATGGATAGCAACCCTCCTCCTGCGAGCTTGCCTCAACAAGAACAATCTTCTGCTTCTTCTCCTTCTGCTTTGCAAGTGCCTTCGTCTCACGAGTCGTCTTCGTCTCCGAGGACGCTGAGATCACCGGGTGGATCGTCGTCGGGTCAGCACACCAGCAGGAGGCACGCCACGTTCCGGGGAATCCGGAGCCGAAGTGGAAAATGGGTGTCCGAGATACGGGAGCCTCGTAAAACCACGCGCATTTGGCTGGGCACGTATCCGACTCCGGAGATGGCTGCCGCCGCGTATGATGTGCCGCACTTGCATTGA 309 0.5825 MDSNPPPASLPQQEQSSASSPSALQVPSSHESSSSPRTLRSPGGSSSGQHTSRRHATFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVPHLH 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral650g00002 102 ProSiteProfiles AP2/ERF domain profile. 57 102 IPR001471 GO:0003700|GO:0006355
Pral650g00002 102 Gene3D AP2/ERF domain 57 101 IPR036955 GO:0003700|GO:0006355
Pral650g00002 102 MobiDBLite consensus disorder prediction 1 54 - -
Pral650g00002 102 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 99 - -
Pral650g00002 102 Pfam AP2 domain 58 97 IPR001471 GO:0003700|GO:0006355
Pral650g00002 102 SMART rav1_2 57 101 IPR001471 GO:0003700|GO:0006355
Pral650g00002 102 MobiDBLite consensus disorder prediction 1 67 - -
Pral650g00002 102 CDD AP2 58 98 IPR001471 GO:0003700|GO:0006355
Pral650g00002 102 SUPERFAMILY DNA-binding domain 58 99 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral650g00002 Pral-Chr650 28981 29445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral650g00002 24 101 AP2-EREBP Transcription Factor Family AT4G16750 54.023 3.23e-20 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral650g00002 AP2 1.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral650g00002 - - pcin:129293795 142.895