Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral650g00001 ATGTTTTCATTCACGTGTTCTTCAGACCCACATCCTCTGAGGCTGCGATATAGTAGTGATTTAGAGGTGGCGGAGTGCGCGACGTCGCCGGCTTCGGACTGTGGCAGTGGCAACGGAGTTCGTTCTTTGGTTTTGTCCGACGAGGAGGTGTTGTTGGCTGCGAGTCACCCGAAGAAACGCGCCGGAAGGAAGAAGTTCCGGGAGACTCGCCACCCGGTGTACCGGGGTGTTCGGAGGAGGAACTCCGGCAAGTGGGTGTGCGAAATGCGTGAGCCCAATAAGAAAACAAGAATTTGGCTGGGGACATTCCCCACTCCGGAAATGGCCGCGAGGGCCCACGACGTCGCAGCGATAGCTCTGCGGGGCCGGTCAGCTCTTCTTAACTTTGCAGACTCTGCTTGGCGGCTGCCACTGCCGGCGTCCACTGGGGCCAAGGATATTCAGAAGGCAGCGGCAGAAGCTGCGGAGGCATTCCGCCCAGGGAAGAAATCGGAGGGCGACGAATTAATTCCGGAAAATGCAGAGGCAACGACCGACACGGCCGTGGCGATGGCGGAGGAGCATAGTATATTCTTAATGGATGAAGAAGCAGTGCCGGGGATGCCGGAGTTGCTGAGGAACATGGCGGACGCTGTGCTGATGTCGCCTGCTCATTCCTATGGGGATCAGCACGATGATGCTGACGTGGAACTGGATGATGCTGAGGTGTCATTATGGAGTTATTCAATGTAA 732 0.5669 MFSFTCSSDPHPLRLRYSSDLEVAECATSPASDCGSGNGVRSLVLSDEEVLLAASHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEMREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGRSALLNFADSAWRLPLPASTGAKDIQKAAAEAAEAFRPGKKSEGDELIPENAEATTDTAVAMAEEHSIFLMDEEAVPGMPELLRNMADAVLMSPAHSYGDQHDDADVELDDAEVSLWSYSM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral650g00001 243 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Pral650g00001 243 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Pral650g00001 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 43 241 IPR045277 GO:0003700
Pral650g00001 243 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Pral650g00001 243 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Pral650g00001 243 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Pral650g00001 243 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Pral650g00001 243 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Pral650g00001 243 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Pral650g00001 243 FunFam Ethylene-responsive transcription factor 2 72 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral650g00001 Pral-Chr650 4403 5443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral650g00001 52 241 AP2-EREBP Transcription Factor Family AT4G25470 63.542 1.29e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral650g00001 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral650g00001 - - qsa:O6P43_008272 264.618