Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral649g00004 ATGTCTTCCTTCTTCGGAGTCCTCGTTGGGGAATATGCTTCTAAATTGCGAATACCTCCCCTGTTTGTCTCCAGATTTTCTAGTCTTGCACCAAAAACAGCAACACTTATTTATTCTTCAAAAAGATCATGGACGGTTGATATTGAGGAAGAAGATAACAAAAAATTGTATTTCAAAAGAGGTTGGAATACATTTGTAGAAGACAATGCTTTAGAAACTGGGGAGTTCATAGTTTTCAAATTTGATGGGGATTCAAGATTTAAAGCCAACATCTACGGAAAATCTTACCTCAAAAGAAAATCCTCAATGTCAGTGTCTTCTTTCTTCAAAGTCCTCGTCAATGGCGAGTCCACTACTAAATTGAGAATCCCTTTATTGTTTGTCTCCAGATATTCTACTCTGGTCCCAAAAACAGTAACATTTATCAGAGCTTCTTCAAACAGATCATGGAAGGTTGATATTGTGGAAGAAGATGACAAAAGGTTATATTATAAGACTGGCTGGAGTGAATTTGTAGAAGATAATGCTTTGGAAATTGCACATTTTTTAGTTTTCAAGTTTGATGGGGATTCAACATTTCGAGTTAAGATCTATGGAAGCTCTGCTTGTGAGAAGGAACTTGAGAATCAGCCATGTGTCAATCAGAAATACTGCATACAGTATTATAATAAACAAACAACAACTCTAGATCATCAAGAAAATCTGAAAGAAAGTGATCCCATCGATGTAGATCGACAAAAGTCGAAGCCAAATGTTGAGATAACAGAGGAGAGGGTTGATCATGATGATCGTCATGAAAATTCTAACCAAGAAACTGGGGCTCCGCAGAAAGAAGCTGAAGAACAAAGTGACGAAACTATTGCTGTTCAATCCGAATCTCATTGCCCTCTCAAGAAAACTGGCAACAAGCATGATGGACCAATGCGTAAAGCATCATCTAGTAAAGGCCTCAGTTTGGAGTCTAAGAAGAATCCTTCATTCAAAATTCTTCTGCAACAAGCCTATGCAGAAAAGGGTGTCATGTGCTTTCCAACAGAGTTTTTCCAGAAGCATATGAAAAACCAGAGACAAGAGGTAGAGATTGAGACAGTAGAAGGAGTATGGACTGTGACATTACTCCCCCATATGAAAAGGACAAGGACATTTGCCAGATTAAGCAAAGGTTGGTCAGAGTTCGCCAAAGCGAACCGTTTCAAAACTGGAGAGACTCTCTTGTTTAAAATGATCCGAAAAGGTGATCGTCCCAAGTTTATTGTTGACAGGCAACGATGTTAA 1275 0.3843 MSSFFGVLVGEYASKLRIPPLFVSRFSSLAPKTATLIYSSKRSWTVDIEEEDNKKLYFKRGWNTFVEDNALETGEFIVFKFDGDSRFKANIYGKSYLKRKSSMSVSSFFKVLVNGESTTKLRIPLLFVSRYSTLVPKTVTFIRASSNRSWKVDIVEEDDKRLYYKTGWSEFVEDNALEIAHFLVFKFDGDSTFRVKIYGSSACEKELENQPCVNQKYCIQYYNKQTTTLDHQENLKESDPIDVDRQKSKPNVEITEERVDHDDRHENSNQETGAPQKEAEEQSDETIAVQSESHCPLKKTGNKHDGPMRKASSSKGLSLESKKNPSFKILLQQAYAEKGVMCFPTEFFQKHMKNQRQEVEIETVEGVWTVTLLPHMKRTRTFARLSKGWSEFAKANRFKTGETLLFKMIRKGDRPKFIVDRQRC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral649g00004 424 CDD B3_DNA 327 421 IPR003340 GO:0003677
Pral649g00004 424 SMART B3_2 4 95 IPR003340 GO:0003677
Pral649g00004 424 SMART B3_2 327 423 IPR003340 GO:0003677
Pral649g00004 424 SMART B3_2 108 201 IPR003340 GO:0003677
Pral649g00004 424 Pfam B3 DNA binding domain 327 417 IPR003340 GO:0003677
Pral649g00004 424 Pfam B3 DNA binding domain 108 198 IPR003340 GO:0003677
Pral649g00004 424 Pfam B3 DNA binding domain 15 91 IPR003340 GO:0003677
Pral649g00004 424 SUPERFAMILY DNA-binding pseudobarrel domain 322 424 IPR015300 -
Pral649g00004 424 Gene3D - 308 423 IPR015300 -
Pral649g00004 424 SUPERFAMILY DNA-binding pseudobarrel domain 3 95 IPR015300 -
Pral649g00004 424 MobiDBLite consensus disorder prediction 231 320 - -
Pral649g00004 424 CDD B3_DNA 107 198 IPR003340 GO:0003677
Pral649g00004 424 CDD B3_DNA 3 92 IPR003340 GO:0003677
Pral649g00004 424 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677
Pral649g00004 424 ProSiteProfiles B3 DNA-binding domain profile. 326 423 IPR003340 GO:0003677
Pral649g00004 424 Gene3D - 100 203 IPR015300 -
Pral649g00004 424 Gene3D - 1 96 IPR015300 -
Pral649g00004 424 ProSiteProfiles B3 DNA-binding domain profile. 106 201 IPR003340 GO:0003677
Pral649g00004 424 MobiDBLite consensus disorder prediction 231 284 - -
Pral649g00004 424 PANTHER B3 DOMAIN-CONTAINING 3 99 - -
Pral649g00004 424 SUPERFAMILY DNA-binding pseudobarrel domain 102 203 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral649g00004 Pral-Chr649 34840 44623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral649g00004 4 99 B3 DNA Binding Superfamily AT5G66980 38.000 1.48e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral649g00004 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral649g00004 - - pcin:129291410 643.269