Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral63g00016 ATGCAAATTTCAGTGGATGAGTTTGAGTCAAATTCTAAGAGGCCAAAGCTTGAAGACGTATCATCCACTTCCATGGATGGCAGGACCGTTTGCAGCAATGGAGGTGATATTGAAATCAACATTGGCACTGAAACTCTTGGATGCAATTTGCCTGTGAATGACAGGAATGGACAATTTAATGATAGTTCTGTGGGCTTGGATCTGGAACCTTATTCTGAGGGTTTATGTCATTCATGGAAGGAACCCGCTGATATAGTGGAGCAGAAGGATTATTCTGATGAGGATAAGATTCCATCTGGCAATCTTAATGTGCTTCCTCAGGATTGTGAGCTTGTGAACTTGCTTAATGTGACTAGAAGTTCCTGGCTCCAAAACTACGGATTTCTTCAAGATTGTGTAATACGCTTCTTGTGTGTGCTGTCACTAGATCGCTTTGGAGATTATGTCTCCGACCAGGTTGTTGCTCCTGTGCGGGAAACCTGTGCGCAAGCATTAGGTGCTGCATTCAAGTACATGCATCCGGCATTAGTAAATGAAACCTTAAATATATTGTTGAAAATGCAGTGTAGAGCAGAATGGGAGATTCGTCATGGCAGCCTTTTAGGTATCAAATATTTAGTTGCTGTGCGGCAGGAAATGCTTCCAGAATTGCTTGGACGTGTTCTTCCTGCATGCAAATTTGGGTTGGAGGACCCAGATGATGATGTCCGAGCTGTTGCGGCTGATGCTCTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACTTTGCACTCAATTGTGATGCTATTGTGGGACATTTTGCTTGATTTGGACGACTTAAGCCCATCCACTAGCAGTGTAATGAATCTTCTGGCAGAAATTTATTCTCAGAATGAGATGGTTCCAAAGATGAATCAAGCCATTGAACTGGGAGATACAGAAATGGGTAATCTAATTGGAATTGGTGGCAGCGGGGATAGTGATCATGACAAAAATCCTTATATGCTTTCAATGCTGGCACCACGCTTGTGGCCTTTTATGAGGCATAGCATCACCTCTGTTCGATTTTCAGCAATTCGTACTTTGGAGAGGCTGCTTGAAGCTGGATACAAGAGAAGCATGTCTGAGCAGTTTAGTTCTTCATTGTGGCCTTCTTTTATCCTTGGAGATACCCTTCGAATTGTATTTCAGAATCTGCTATTGGAATCAAATGAGGCTATATTGCAGTGTTCTGAGAGAGTTTGGAGGCTTCTTGTTCAGTGTCCTGTGGAGGATTTGGAAATGGCTGCAAGATCTTATATGAATTCTTGGATAGAACTTGCATCTACCCCTTTTGGTTCGGCATTAGATACCTCAAAAATGTTTTGGCCTGTTACCTTTCCGCAAAAAAGTCAATCTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGGTTGAAAATGAATATGGTGGAGATCTTGGCTTGGATTCTACTAAAGGAATTAATCTTCAAGAAAGAAATGGAGATGTTTCCATGGGTTCTGTCAAGATTGTTGTTGGTGCTGATGTTGATACATCAGTAACTAATACTAGAGTGATAACTGCTACTGCATTGGGAATTTTTGCTTCTAAGCTACCTGAGGTTTCTGTTAAAGATGTGATTGATCCGCTGTGGAGTGCTCTTACCTCTTCGTCTGGTGTCCAGCGCCAGGTTGCGTCCATGGTATTTATTTCTTGGTTCAAGGAGACTAAAAGAAGTGGTTTATCTGAAAACCTTAAGATTATCCCTGGTGTCCCAAATCATCTGAAAGACTGGCTGCTGGACTTATTGTCATGTTCTGATCCTGCATTCCCGACCAAGGATTCATTTCTTCCTTATGCTGAGCTTTCAAGAACATATTCAAAGATGCGTAGTGAGGCTGGTCAATTGCTTAATGCTGTGAAATGTTCTGGTATGTTTGATGACTTATTGTCAACTATGAAAGCTGAGTTGGAGAGCTTGAGTGTGGATGATGCCATTAATTTTGCATCAAAAGTTCCAGCATTGTCCAATGAAAGTTTCGGGAATGAATCCTCAGGAAGAAACATTATGGATGATATTGAGTCGTCAAAACAGAGACTCTTGACAACCTCTGGCTATTTAAAATGCGTTCAGAGCAATTTGCATGTTACGGTTTCATCTGCAGTTGCGGCTGCAGTTGTCTGGATGTCAGAATTTCCTTCACGCCTCACCCCAATTATTTTGCCTTTGATGGCTTCAATAAAACGAGAGCAGGAGGAAATACTGCAAATGAAGGCTGCTGAGGCACTGGCTGAGCTTATGTATCACTCTGTTGACCGTAAACCTTGTCCAAATGATAAATTAATTAAGAATATTTGTGGCTTGACTTGTATGGATCCCGCTGAGACACCTCAAGCTGAATTTATTAGATCCATGGACAGTATTGATGACCAAGGTCTCATGTCCTTTGGAACCCCCGGGGTTAAACAGAGATCCAAGGCCCACATGCTGGCTGGTGAAGACCGATCAAAGGTTGAGGGCTTTATCAGCAGACGTGGATCTGAACTCGCATTGAGGTTTCTATGTGAGAAGTTTGGTGTTTCATTGTTTGATAAGCTTCCCAAGTTGTGGGATTGCCTTACTGAGGTGATTAAGCCTAGCTCTGCCGAATCTCTTGCTGCTTCTGAAAAAGAAGTCACTTTGGCTATTGAGTCTGTCAGCAATCCCCAGACCCTGATTAACAATATTCAGGTGGTACGCTCTATTGCTCCCCTCCTGCATGAGGATTTGAAGCCAAAATTGTTTACACTTCTCCCTTGCATTTTCAAATGTGTCAAGCATCCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATTACTTCAATGGCCAGGTCAATGACTTTAAAAGTTATGGGAGCTGTGGTTGAAAATGCTGTCCCTATGTTAGCAGATGCTTCATCAGTCCATGCTCGGCAAGGAGCTGGCATGCTGATTAGTTTTCTTGTTCAGGGGCTTGGTGTTGAGCTGGTCCCTTATGCTCCTCTCTTGGTAGTTCCACTTCTTCGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTTACACATAGTTTTGCCACTCTTGTACCTTTACTTCCTTTAGCACGGGGCCTTCCTCCACCTCTTGGTTTAGGAGAGGGTTTATCCAGAAACACAGGAGATGTAAAATTTTTGGAGCAACTACTTGACAATTCTCATATTGAAGATTATCGGCTGTGCACTGAATTGAAAGTAATATTGAGAAGGTATCAGCAGGAAGGTATAAATTGGTTGGCTTTCTTGAAACGTTTCAAGCTTCATGGAATTCTATGTGATGACATGGGACTTGGTAAAACACTTCAAGCGTCGGCAATTGTGGCGTCTGAAATAGCTGAGCATCAAAGTCTGAATGAGAATGAGGAACTTCTGCCGTCTATAATCATTTGTCCGTCAACTCTTGTTGCACATTGGGCTTTTGAGATAGAGAAATATATTGATGTTTCTATTGTATCTACTCTTCAATATATTGGTTCTGCACAGGAGCGGATGTGTACTAGAGATAATTTTTGTAAGCATAATGTCATCATAACATCATATGATGTTGTCCGTAAGGATATTGATTATTTAGTTCAGATACAATGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCTAAGTCCAAAGTAACCCTAGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGAACACCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCAGGATTTCTTGGTACAGAGAGACAGTTCCATGCCACTTATGGAAAACCACTCCTAGCTGCAAGAGATCCCAAGTGCTCTGCTAGGGATGCTGAAGCAGGAGTTCTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACAAAGGAAGAAGTCTTATCTGATCTGCCGGAAAAAATAATTCAGGACAGATACTGTGATTTAAGTCCTGTACAGCTTAAACTCTATGAACAGTTTTCTGGTTCTCGTGTCAAACAAGAAATCTCATCTATAGTAGTAATGAATGAATCCACTGCGACAGAAGAAAGCAGCAGATCACCCAAAGCATCCTCACATGTTTTCCAGGCACTTCAATACTTGCTAAAGTTGTGCAGTCATCCTTTGCTTGTTGTTGGTGAGAAGATTCCTGATCAACTTTCTACCATTCTCTCAGAATTGTTGCCTGTTGACTCTGAAATCATGTCAGAACTCCACAAACTACATCATTCACCAAAATTGGTGGCTCTCCAGGAGATCTTGGAAGAATGTGGAATAGGAATTGATTCTTCAGGTTCTGAGAGTGCTGTTAGCATTGGGCAGCACAGGGTCTTGATATTTGCTCAACATAAGGCTTTTCTTGATATTATTGAAAGAGATTTATTCCAGACACATATGAAGAACGTCACATATTTGCGACTGGATGGATCGGTTGAGCCGGAGAAGCGTTTTGAAATTGTCAAAACATTCAATTCAGACCCTACCATTGATGTATTGTTGCTTACGACGCATGTGGGTGGGCTTGGTTTGAACCTGACATCCGCAGATACCCTTGTTTTTGTGGAGCATGATTGGAATCCAATGCGCGATCATCAGGCTATGGACAGAGCACACCGTTTAGGTCAAAAGAAAGTTGTCAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTCATGAGTCTACAAAGATTCAAAGTTTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCCAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTGTTCACGTCAGCAGAAACCTTGAAGAAGGGAGCTTCTGCTGCGAACCGATCAAATGGCACGGATGGAGATGCTAAATCCGTGGGAAGTGGGAAGGGGCTGAAAGCAATACTCGGAGGTTTGGAAGAGCTTTGGGACCATTCACAATATACAGAGGAGTACGATCTGACTCAATTTTTGTCAAAGCTGAATGGCTGA 5037 0.4211 MQISVDEFESNSKRPKLEDVSSTSMDGRTVCSNGGDIEINIGTETLGCNLPVNDRNGQFNDSSVGLDLEPYSEGLCHSWKEPADIVEQKDYSDEDKIPSGNLNVLPQDCELVNLLNVTRSSWLQNYGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRAEWEIRHGSLLGIKYLVAVRQEMLPELLGRVLPACKFGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQNEMVPKMNQAIELGDTEMGNLIGIGGSGDSDHDKNPYMLSMLAPRLWPFMRHSITSVRFSAIRTLERLLEAGYKRSMSEQFSSSLWPSFILGDTLRIVFQNLLLESNEAILQCSERVWRLLVQCPVEDLEMAARSYMNSWIELASTPFGSALDTSKMFWPVTFPQKSQSRAAAKMRAVKVENEYGGDLGLDSTKGINLQERNGDVSMGSVKIVVGADVDTSVTNTRVITATALGIFASKLPEVSVKDVIDPLWSALTSSSGVQRQVASMVFISWFKETKRSGLSENLKIIPGVPNHLKDWLLDLLSCSDPAFPTKDSFLPYAELSRTYSKMRSEAGQLLNAVKCSGMFDDLLSTMKAELESLSVDDAINFASKVPALSNESFGNESSGRNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEFPSRLTPIILPLMASIKREQEEILQMKAAEALAELMYHSVDRKPCPNDKLIKNICGLTCMDPAETPQAEFIRSMDSIDDQGLMSFGTPGVKQRSKAHMLAGEDRSKVEGFISRRGSELALRFLCEKFGVSLFDKLPKLWDCLTEVIKPSSAESLAASEKEVTLAIESVSNPQTLINNIQVVRSIAPLLHEDLKPKLFTLLPCIFKCVKHPHVAVRLAASRCITSMARSMTLKVMGAVVENAVPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFATLVPLLPLARGLPPPLGLGEGLSRNTGDVKFLEQLLDNSHIEDYRLCTELKVILRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIAEHQSLNENEELLPSIIICPSTLVAHWAFEIEKYIDVSIVSTLQYIGSAQERMCTRDNFCKHNVIITSYDVVRKDIDYLVQIQWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFHATYGKPLLAARDPKCSARDAEAGVLAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRVKQEISSIVVMNESTATEESSRSPKASSHVFQALQYLLKLCSHPLLVVGEKIPDQLSTILSELLPVDSEIMSELHKLHHSPKLVALQEILEECGIGIDSSGSESAVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFTSAETLKKGASAANRSNGTDGDAKSVGSGKGLKAILGGLEELWDHSQYTEEYDLTQFLSKLNG 1678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral63g00016 1678 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1053 1314 - -
Pral63g00016 1678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1070 1315 IPR027417 -
Pral63g00016 1678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1316 1617 IPR027417 -
Pral63g00016 1678 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1607 IPR001650 -
Pral63g00016 1678 FunFam TATA-binding protein-associated factor 172 1325 1643 - -
Pral63g00016 1678 SMART helicmild6 1475 1561 IPR001650 -
Pral63g00016 1678 SMART ultradead3 1079 1276 IPR014001 -
Pral63g00016 1678 Gene3D - 1058 1314 IPR038718 -
Pral63g00016 1678 Gene3D - 821 1040 IPR011989 -
Pral63g00016 1678 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1095 1265 IPR014001 -
Pral63g00016 1678 Gene3D - 1325 1641 IPR027417 -
Pral63g00016 1678 Pfam Domain of unknown function (DUF3535) 410 867 IPR022707 -
Pral63g00016 1678 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 116 1677 IPR044972 GO:0003677|GO:0016887|GO:0017025
Pral63g00016 1678 Pfam Helicase conserved C-terminal domain 1461 1561 IPR001650 -
Pral63g00016 1678 FunFam TATA-binding protein-associated factor BTAF1 831 1041 - -
Pral63g00016 1678 Pfam SNF2-related domain 1101 1397 IPR000330 GO:0005524|GO:0140658
Pral63g00016 1678 Gene3D - 137 386 IPR011989 -
Pral63g00016 1678 CDD SF2_C_SNF 1430 1572 - -
Pral63g00016 1678 MobiDBLite consensus disorder prediction 1 28 - -
Pral63g00016 1678 SUPERFAMILY ARM repeat 138 1122 IPR016024 -
Pral63g00016 1678 CDD DEXHc_Mot1 1083 1315 IPR044078 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral63g00016 Pral-Chr63 631816 658938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral63g00016 1078 1615 RAD5 or RAD16-like Gene Family AT1G02670 26.235 1.81e-42 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral63g00016 DUF3535 1.8e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral63g00016 K15192 - gmx:100777977 2620.5